Locus 2947

Sequence ID dm3.chr2RHet
Location 3,044,340 – 3,044,510
Length 170
Max. P 0.838985
window4048

overview

Window 8

Location 3,044,340 – 3,044,510
Length 170
Sequences 3
Columns 170
Reading direction forward
Mean pairwise identity 50.59
Shannon entropy 0.72456
G+C content 0.49608
Mean single sequence MFE -52.73
Consensus MFE -10.78
Energy contribution -10.25
Covariance contribution -0.53
Combinations/Pair 1.62
Mean z-score -2.46
Structure conservation index 0.20
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.87
SVM RNA-class probability 0.838985
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2RHet 3044340 170 + 3288761
CCUUUCCUGGCUAGGUUGUCCGCUAGCUCAUUUCCCGGGAUGUUGUUGUGUCCCGGGACCCACCUUAUUGUGAGUUUGUUGACAGCUCCUAGUUUGUCUAGGGCUGUCCUCACUUCAUUUACUAGCUUAGAUGUUAUCUUAGCUUUGCUGAGCGCCUUUAUGGCUGCUUG
........(((((((.((((.(((((......((((((((..(....)..))))))))...........(((((......((((((.(((((.....))))))))))))))))........)))))...))))....))))))).....(((((((.....))).)))). ( -63.60, z-score =  -4.83, R)
>droYak2.chrU 1716466 170 + 28119190
CCUUCCUUUCCUAGUUCGUCUGCCGUCUCAUUACCAUCGAUGCCCUGGUGGCUGGAAACCCAGUAGAUCCGCACUGACUUGGUUGUGCUGAGGAUAUCUUGUGCCUCCCUGCUUGCCAGUACACUUUUGAAACUGACCGCUGACGAUUGCUUGGAUCUUAUCGCCGCUUG
........(((.((((((((.((.(((.....(((((((.(((...((..(((((....)))))....))))).)))..))))((((((((((....)))..((......))....)))))))...........))).)).)))))..))).)))............... ( -43.00, z-score =  -0.43, R)
>droWil1.scaffold_180026 113 170 + 3204
CCAUCGCGAGCUAGCUCAUCAGCCAAUUCAUUUCCAGCGAUGGAAGAAUGGCCAGGUACCCAUACAAGGUUUACAAAGUUGACUGAAUUCAGUUCCUCAAUUUGAGUUCGACAUGCGAUAACAAGCUUCGACCUUGAGUUGGCCGAAGCGAGAGCUUCUAUAGCAGCCUG
.......(((....)))....((((.(((..(((((....))))))))))))(((((..........(((..........(((((....)))))...(((((..((.((((...((........)).)))).))..))))))))(((((....))))).......))))) ( -51.60, z-score =  -2.11, R)
>consensus
CCUUCCCUAGCUAGCUCGUCAGCCAACUCAUUUCCAGCGAUGCAAUAGUGGCCAGGAACCCACAAAAUCCUCACUAAGUUGACUGAACUCAGUUUAUCUAGUGCAGUCCUACAUGCAAUUACAAGCUUAGAACUUAACUUAGCCGAACCGAGAGCUUUUAUAGCAGCUUG
.........((((........((((...((((......))))......)))).............((((((.........((((((((.(((.....)))))))))))................(((.............)))........))))))...))))...... (-10.78 = -10.25 +  -0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:49 2011