| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 2,931,434 – 2,931,536 |
| Length | 102 |
| Max. P | 0.575860 |
| Location | 2,931,434 – 2,931,536 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 128 |
| Reading direction | reverse |
| Mean pairwise identity | 64.58 |
| Shannon entropy | 0.49109 |
| G+C content | 0.50791 |
| Mean single sequence MFE | -38.00 |
| Consensus MFE | -21.74 |
| Energy contribution | -22.70 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.575860 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 2931434 102 - 3288761 ------GUCCGGUGAUUUCUACUGGUCUG--UAAACCUUGAU--UGGGGGAGCUUCUGC----CCGGGCAGGGGCAAUCUGU-AUGGCCGCGACCUGGCC-----------GGCCAGAUCUUGAAUUG ------(.((((((.....)))))).)..--........(((--(.((((.((((((((----....))))))))..((((.-.((((((.....)))))-----------)..)))))))).)))). ( -39.00, z-score = -1.01, R) >dp4.Unknown_group_92 4842 128 + 26366 AUCGGGAUUUAUUGCUAUCUCCUUAAACGCUUGAACUUUUGUGGCAGGCGUGCUUGUGCUCAACUGAGCAAUCGCGGCUUGUAAUUACAGUAACCUGGACUCAAACCACGAGGCCUGAUUUUGCAGUG .........((((((.(((.((((..(((((((.((....))..)))))))((...(((((....)))))...))((.(((......(((....)))....))).))..))))...)))...)))))) ( -35.40, z-score = -0.73, R) >droPer1.super_143 21433 128 - 108547 AUCGGGAUUUAUUGCUAUCUCCUUAAACGCUUGAACUUUUGUGGCAGGCGUGCUUGUGCUCAACUGAGCAAUCGCGGCUUGUAAUUACAGUAACCUGGUCUCAAACCGCGAGGCCUGAUUUUGCAGUG .........((((((.(((.......(((((((.((....))..)))))))(((..(((((....))))).((((((.(((......(((....)))....))).)))))))))..)))...)))))) ( -39.60, z-score = -1.57, R) >consensus AUCGGGAUUUAUUGCUAUCUCCUUAAACGCUUGAACUUUUGUGGCAGGCGUGCUUGUGCUCAACUGAGCAAUCGCGGCUUGUAAUUACAGUAACCUGGACUCAAACC_CGAGGCCUGAUUUUGCAGUG .........((((((.(((...................((((.((((((.(((...(((((....)))))...)))))))))....))))......((((((.......)))))).)))...)))))) (-21.74 = -22.70 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:46 2011