| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 2,930,264 – 2,930,388 |
| Length | 124 |
| Max. P | 0.835601 |
| Location | 2,930,264 – 2,930,388 |
|---|---|
| Length | 124 |
| Sequences | 3 |
| Columns | 128 |
| Reading direction | forward |
| Mean pairwise identity | 50.53 |
| Shannon entropy | 0.69638 |
| G+C content | 0.41920 |
| Mean single sequence MFE | -21.43 |
| Consensus MFE | -9.96 |
| Energy contribution | -8.63 |
| Covariance contribution | -1.32 |
| Combinations/Pair | 1.47 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.835601 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 2930264 124 + 3288761 --UUACUCCGGCAACUGUCGUUAUCAUUAUAAAU--UACCAUAGCUAUCUGAGUCCCUAGGCCAGAAGCCAAAAGGAAGACAGUCAUCUUCCCAACAUAAUCAGCGUAACUCUUCAAGUGAACUUACU --(((((..(((....)))(((((.(((((....--.......(((.((((.(((....)))))))))).....((((((......))))))....)))))....)))))......)))))....... ( -23.20, z-score = -1.12, R) >droSec1.super_104 65240 97 + 95517 -----CUCUGGUAACUCACCGUAUAUCUUCUUAU--UAUCACU-CUAUUUGAGUCUCUAGGCCAGAAGCCUUCGUACACAUCCUAA-UUCUACAUUUGGAUCUACA---------------------- -----.((((((.((.....))............--....(((-(.....))))......)))))).......(((...((((.((-(.....))).)))).))).---------------------- ( -13.90, z-score = -0.45, R) >droAna3.scaffold_13250 506502 121 - 3535662 CUUAACUCCGGCAAUCACCGUCAUAAUUAUCUAUCUUUUCUUUGCCGGCUGAGUCACUAGGCCAGCGGC---AACAGAGACAGUAAACUCCGCAACAUAAUCGUCGUAACUCUAAAAGGUAGCU---- ........(((......)))..........(((((((((..((((((.(((.(((....))))))))))---)).((((..((....))..((.((......)).))..)))))))))))))..---- ( -27.20, z-score = -1.34, R) >consensus __U_ACUCCGGCAACUAACGUUAUAAUUAUAUAU__UAUCAUUGCUAUCUGAGUCACUAGGCCAGAAGCC__AACAAAGACAGUAA_CUCCACAACAUAAUCAACGUAACUCU__AAG__A_CU____ ........((.................................(((.((((.(((....)))))))))).....(((((........)))))............))...................... ( -9.96 = -8.63 + -1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:45 2011