Locus 2942

Sequence ID dm3.chr2RHet
Location 2,848,148 – 2,848,294
Length 146
Max. P 0.714282
window4041

overview

Window 1

Location 2,848,148 – 2,848,294
Length 146
Sequences 4
Columns 146
Reading direction forward
Mean pairwise identity 62.21
Shannon entropy 0.63529
G+C content 0.50856
Mean single sequence MFE -49.90
Consensus MFE -16.50
Energy contribution -18.44
Covariance contribution 1.94
Combinations/Pair 1.42
Mean z-score -1.76
Structure conservation index 0.33
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.48
SVM RNA-class probability 0.714282
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2RHet 2848148 146 + 3288761
ACCGCUCGUUCGUGCGCAAGCGACGAUGAUGAGCAACUUGUCUCUGAGUUGAGGGUCAGCUCAGCUCAGUACAAGAAGCUCAUUCUGAAGGUCAAAGAGGAUAACUGGAGGCGCUUCGUGGGAUAGAACAAGGACGAUCCAUGGGG
.((((....((((((....)).)))).(((((((..(((((..((((((((((......)))))))))).)))))..)))))))..(((((((....((.....))...))).)))))))).......((.((.....)).))... ( -54.10, z-score =  -1.99, R)
>droAna3.scaffold_13219 83978 146 + 86653
AGGGCCAGAAGGGCUAAUGCGGAAGGCGUGGCCCAGCUUAGGGAUCAGCUUAGUACUAGGCUUCAUGAGUACAAGCAUAGGGUUUUGAGAAUGAAAGAAGGCGAGUGGCGCUCUUUCGUAGAACGGAAUAAAAACGAUCCCUGGGG
..........((((((.(((.....)))))))))..((((((((((.((((.(((((..........))))))))).....((((((...((((((((..(((.....)))))))))))....))))))......)))))))))). ( -51.40, z-score =  -2.40, R)
>dp4.Unknown_singleton_3471 14372 146 + 15135
AGGGCUAGAUCCUUCAAUGCUGAAAACGAUUCCCAGCUCAGGGGUGAGCUUGGUCGAUGUAUGAAUGAGUACAAGGAAAUGCUUGUAAAAGUGGAAGAGGCUGAGUGGCGUUCCUUUUUGGAGCGCAAUAAGGACGAUCCCUGGGG
.(((...((((.((((....))))...)))))))..(((((((((..(((..(((..(((((......))))).......((((....))))......)))..))).(((((((.....)))))))..........))))))))). ( -48.60, z-score =  -1.63, R)
>droVir3.scaffold_13036 275223 146 + 1135500
AGGGCCAGAGCUACCAAUGCGGAUGGUGCAGCCCAACUCAGGAUUGAAUAUAGUCGGUGUAUGAGUGAGUACAAGCAAAUGCUUGUAAAGGUGAAAGAAGAUGAAUGGCGCUCUUUCCUGGAGCGCAAUAAGGAUGACCCCUGGGG
.((((....((((((.....)).))))...))))..((((((...((......))(((...........(((((((....)))))))....................(((((((.....)))))))..........))))))))). ( -45.50, z-score =  -1.00, R)
>consensus
AGGGCCAGAUCGUCCAAUGCGGAAGACGAUGCCCAACUCAGGGAUGAGCUUAGUCGAAGUAUGAAUGAGUACAAGCAAAUGCUUGUAAAAGUGAAAGAAGAUGAGUGGCGCUCCUUCGUGGAACGCAAUAAGGACGAUCCCUGGGG
.((((.........................))))..(((((((((........................((((((......))))))....................(((((((.....)))))))..........))))))))). (-16.50 = -18.44 +   1.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:43 2011