| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 2,841,375 – 2,841,474 |
| Length | 99 |
| Max. P | 0.907974 |
| Location | 2,841,375 – 2,841,474 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 53.61 |
| Shannon entropy | 0.63285 |
| G+C content | 0.45907 |
| Mean single sequence MFE | -24.37 |
| Consensus MFE | -10.04 |
| Energy contribution | -12.27 |
| Covariance contribution | 2.23 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.907974 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 2841375 99 - 3288761 -----------UACAAUCCGAACUCCAUCCCAUUCCUAAAAUCGACAUCCCGUGCCAUACGGCUCAUGUGGAUAUUACAGGUAAACUUAGCGGAAAAAGUGAGCAGAAGG -----------.....((((.........((.....(((.(((.((((.(((((...)))))...)))).))).)))..)).........))))................ ( -15.27, z-score = 1.16, R) >droSec1.super_7258 458 93 + 1725 -----------------AGCAAUACCAUUACGAUAACAUCAAGCCAGUACCGUUCGCUACGGUACACAUUGAUCAUCUAGGACCUUUUCCGAGAAGUUCUAGGCGUAAUG -----------------........(((((((.....(((((....(((((((.....)))))))...)))))..((((((((.(((....))).))))))))))))))) ( -27.90, z-score = -4.30, R) >droYak2.chr2L 1639978 110 + 22324452 AGGAGGUCGCCAAGAGGGUCAAUACCAUUACGAUAACAUGAAGCCAGUACCGUUCGCUACGGUACACAUCGUUCAUCUAGGACCUUUUCCGAGAAGUUCCAAGCGUAAUG .((((.((.(..((((((((.........(((((....((....))(((((((.....)))))))..)))))........))))))))..).))..)))).......... ( -29.93, z-score = -1.85, R) >consensus ____________A_A__ACCAAUACCAUUACGAUAACAUAAAGCCAGUACCGUUCGCUACGGUACACAUCGAUCAUCUAGGACCUUUUCCGAGAAGUUCUAAGCGUAAUG .........................(((((((..............(((((((.....)))))))............((((((.(((....))).))))))..))))))) (-10.04 = -12.27 + 2.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:42 2011