| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,119,266 – 2,119,343 |
| Length | 77 |
| Max. P | 0.923050 |
| Location | 2,119,266 – 2,119,343 |
|---|---|
| Length | 77 |
| Sequences | 3 |
| Columns | 88 |
| Reading direction | reverse |
| Mean pairwise identity | 55.74 |
| Shannon entropy | 0.57765 |
| G+C content | 0.48812 |
| Mean single sequence MFE | -20.40 |
| Consensus MFE | -9.81 |
| Energy contribution | -9.37 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.923050 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2119266 77 - 23011544 ----------AGAACCACAGCAUGUUGGUUGUCAUAUCAAGGUGAGGUAUGCGGCAGCGAGUGCCGAGAACCCUGAUGCAAGUGGAA- ----------....((((.((((...((((.(((((((.......)))))..((((.....)))))).))))...))))..))))..- ( -24.10, z-score = -1.32, R) >droSim1.chrU 10533851 78 + 15797150 AGAACCCUAGGAAUGCUUAUCAUAUUGAUU---------AGGUGAGCUGUGCGGCUACGAGAGCCG-UAGUAGUAGAGCGAAAAGUAG .............(((((.((.((((....---------.)))).(((.(((.((((((.....))-)))).))).))))).))))). ( -20.50, z-score = -1.47, R) >droSec1.super_86 73015 60 - 128402 ------------------AGCAUAUUGAUU---------AAGUGAGCUGUGCGGCUACGAGAGCCG-UAGUAGUAGAGCGAGAAGUAG ------------------............---------......(((.(((.((((((.....))-)))).))).)))......... ( -16.60, z-score = -2.05, R) >consensus ____________A__C__AGCAUAUUGAUU_________AGGUGAGCUGUGCGGCUACGAGAGCCG_UAGUAGUAGAGCGAGAAGUAG .........................................((..(((((.(((((.....)))))...)))))...))......... ( -9.81 = -9.37 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:13 2011