| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 2,808,828 – 2,808,938 |
| Length | 110 |
| Max. P | 0.906407 |
| Location | 2,808,828 – 2,808,938 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 73.16 |
| Shannon entropy | 0.43429 |
| G+C content | 0.46867 |
| Mean single sequence MFE | -29.93 |
| Consensus MFE | -16.08 |
| Energy contribution | -17.59 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.906407 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 2808828 110 + 3288761 CCCUGCGUUACGGUAUCAAUCAGCGCAUUCGGUAGUAGUAGUUCCCUACCGAAUACGAGCAGUACUGGACUGUACCUUGUUGAUUCCGAGGUACUGCUGUUGUACGCCAG ....((((.((((((....((((..((((((((((..(....)..))))))))).......)..))))...((((((((.......))))))))))))))...))))... ( -34.91, z-score = -1.62, R) >droSec1.super_82 201 102 - 146827 -------UUACUGUAUCAA-CAGCGUAUUCGGUAGUCCAAGUUCCCUACCGAAUAAGAGUUGUGCUGGACUGUAUUUCGUUAAUUCCGAGGUACUCCUGUUGUACGCCAG -------.....((((..(-((((.((((((((((..........))))))))))...)))))((.(((..((((((((.......))))))))))).)).))))..... ( -30.20, z-score = -2.91, R) >droSim1.chrU 8674092 102 - 15797150 -------UUACUGUAUCAA-CAGCGUAUUCGGUAGUCCAAGUUCCCUACCGAAUAUGAGUUGUGCUGGACUGUAUUUCGUUAAUUCCGAGGUACUCCUGUUGUACGCCAG -------.....(((.(((-(((((((((((((((..........))))))))))))((((......))))((((((((.......))))))))..)))))))))..... ( -32.50, z-score = -3.59, R) >dp4.chrXL_group1a 7405802 110 - 9151740 CCUAGUGUUACCUCGUCGAAUAGGUUGCCCGGUAAUCUAAGUUCUCUCCCGAAUAUCAGGUAUGCUGGACUAAACCCUGUUGCUUCUGACUUGCUGCUAUUUAUCGCUAG .((((((...........((((((((..((((((((((..((((......))))...)))).))))))....)).))))))((..(......)..)).......)))))) ( -22.10, z-score = 0.02, R) >consensus _______UUACUGUAUCAA_CAGCGUAUUCGGUAGUCCAAGUUCCCUACCGAAUAUGAGUUGUGCUGGACUGUACCUCGUUAAUUCCGAGGUACUCCUGUUGUACGCCAG .......................((((((((((((..........)))))))))))).......((((...((((((((.......))))))))............)))) (-16.08 = -17.59 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:39 2011