| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 2,782,876 – 2,782,937 |
| Length | 61 |
| Max. P | 0.740651 |
| Location | 2,782,876 – 2,782,937 |
|---|---|
| Length | 61 |
| Sequences | 3 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 92.22 |
| Shannon entropy | 0.10538 |
| G+C content | 0.28283 |
| Mean single sequence MFE | -6.50 |
| Consensus MFE | -6.72 |
| Energy contribution | -6.50 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -0.71 |
| Structure conservation index | 1.03 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.740651 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 2782876 61 - 3288761 UUAUUCUCUUGGGUGCUCUUAUUCUCUAUGACGAAUUCUAAGAAAAAAAAACAAUUAUUAU ......(((((((...((((((.....)))).))..))))))).................. ( -6.70, z-score = -1.09, R) >droSec1.super_104 69932 58 - 95517 UUAUUCUCUUGGGUGCUCUUAUUCUCUAUGACGAAUUCUAGGAAAAAACAAAUAUUAU--- ......(((((((...((((((.....)))).))..)))))))...............--- ( -6.40, z-score = -0.51, R) >droSim1.chr2h_random 651093 58 - 3178526 UUAUUCUCUUGGGUGCUCUUAUUCUCUAUGACGAAUUCUAGGAAAAAACAAAUAUUAU--- ......(((((((...((((((.....)))).))..)))))))...............--- ( -6.40, z-score = -0.51, R) >consensus UUAUUCUCUUGGGUGCUCUUAUUCUCUAUGACGAAUUCUAGGAAAAAACAAAUAUUAU___ ......(((((((...((((((.....)))).))..))))))).................. ( -6.72 = -6.50 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:38 2011