| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 2,645,123 – 2,645,180 |
| Length | 57 |
| Max. P | 0.989848 |
| Location | 2,645,123 – 2,645,180 |
|---|---|
| Length | 57 |
| Sequences | 4 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 65.80 |
| Shannon entropy | 0.56863 |
| G+C content | 0.44147 |
| Mean single sequence MFE | -9.80 |
| Consensus MFE | -7.69 |
| Energy contribution | -7.38 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.75 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.39 |
| SVM RNA-class probability | 0.989848 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 2645123 57 - 3288761 -GUUUAUUAACUAUCCCCCCCUCAGGUUUUUGACCGUCCUCGGUCAAGAUGUAUUUGU -.....................((((((((((((((....)))))))))...))))). ( -12.20, z-score = -2.48, R) >droAna3.scaffold_13503 505 57 - 2270 -GGUUGUUAACUAUUCCCCCCUUAAGUUGGACGCCGUCCUCGGUGAAAGCCAAUUCGU -((..((.....))..))......((((((.(((((....)))))....))))))... ( -12.20, z-score = -0.82, R) >droWil1.scaffold_181148 2738485 57 + 5435427 -GAUUGUUAACUUCUCCCCUCCUAAGUUCAUUGCCGUCCUCGGUGAUGCAUGACUCUU -.......................(((((((..(((....)))..)))...))))... ( -10.50, z-score = -2.03, R) >droMoj3.scaffold_6100 31444 58 + 46180 UUUGUGUUAACUACUCUCCCCUUAAGAUUUUGACCGACCUCGUUCAAACUAAAAUUUU ............................(((((.((....)).))))).......... ( -4.30, z-score = -0.44, R) >consensus _GUUUGUUAACUACUCCCCCCUUAAGUUUUUGACCGUCCUCGGUCAAACUAAAUUCGU ............................((((((((....)))))))).......... ( -7.69 = -7.38 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:37 2011