| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 2,597,639 – 2,597,705 |
| Length | 66 |
| Max. P | 0.590605 |
| Location | 2,597,639 – 2,597,705 |
|---|---|
| Length | 66 |
| Sequences | 3 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 63.64 |
| Shannon entropy | 0.52604 |
| G+C content | 0.49818 |
| Mean single sequence MFE | -13.74 |
| Consensus MFE | -6.39 |
| Energy contribution | -6.50 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.590605 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 2597639 66 + 3288761 CUUUUUCAUCUAUGUGCCGAGCGAAGUUUGCGGCAAAAAUGCUUCUCUCGUUACUUGAUUCUGCCU .......(((...(((.((((.(((((.............))))).)))).)))..)))....... ( -13.42, z-score = -0.79, R) >dp4.Unknown_singleton_1475 33030 50 - 39955 CCUUUUCCUCCAUGGCCCUAGCGUAAUUUGCAGCCAAAACGCUGCGAUCG---------------- ..............((....)).....(((((((......)))))))...---------------- ( -10.00, z-score = -1.10, R) >droPer1.super_74 138028 66 - 351172 CAUUUUCCUCCAUGGCCCUGGCGUAAUUUGCAGCCAAAACGCUGCGAUCCUCUCUGGUUUACGUCU ......((.....))....(((((((.(((((((......))))))).((.....)).))))))). ( -17.80, z-score = -2.33, R) >consensus CAUUUUCCUCCAUGGCCCUAGCGUAAUUUGCAGCCAAAACGCUGCGAUCGU__CU_G_UU__G_CU .............................(((((......)))))..................... ( -6.39 = -6.50 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:36 2011