| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 2,591,911 – 2,591,963 |
| Length | 52 |
| Max. P | 0.992462 |
| Location | 2,591,911 – 2,591,963 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 60.90 |
| Shannon entropy | 0.55857 |
| G+C content | 0.48077 |
| Mean single sequence MFE | -16.80 |
| Consensus MFE | -8.70 |
| Energy contribution | -8.83 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.53 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.54 |
| SVM RNA-class probability | 0.992462 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 2591911 52 - 3288761 ACGGGGAGGUGGAGUCUUAAUUGCGGUUAGAUCUACCCUCGCGUCGGAGGAG (((.(..((((((.(((.(((....))))))))))))..).)))........ ( -15.00, z-score = -0.03, R) >droAna3.scaffold_13250 2455347 52 + 3535662 AAGAGGCGGUGGAGUCUAUAUCUCUAAUAACUCCAAUUUCGCUUCUGAAAUU .((((((((((((((.(((.......)))))))))...))))))))...... ( -17.00, z-score = -3.91, R) >droMoj3.scaffold_6482 396655 52 + 2735782 UAGAGGGGGUGGGGAGUUAAUUGCUGUUAAAUCCAGUAUCCUCUCCGAAGUG ..(((((((((.(((.(((((....))))).)))..)))))))))....... ( -18.40, z-score = -2.69, R) >consensus AAGAGGAGGUGGAGUCUUAAUUGCUGUUAAAUCCAAUAUCGCCUCCGAAGUG .((((((((((((...(((((....))))).))))...))))))))...... ( -8.70 = -8.83 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:35 2011