| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 2,368,168 – 2,368,228 |
| Length | 60 |
| Max. P | 0.672118 |
| Location | 2,368,168 – 2,368,228 |
|---|---|
| Length | 60 |
| Sequences | 7 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 50.56 |
| Shannon entropy | 0.96800 |
| G+C content | 0.38530 |
| Mean single sequence MFE | -9.13 |
| Consensus MFE | -4.14 |
| Energy contribution | -5.23 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.17 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.672118 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 2368168 60 - 3288761 -------UUGUCUAUCUUU--AUGCAUCUGGCUAGCUCCAGCAACGUGCUAUGGAAACGCUCCACCUGC -------............--..(((..(((..(((...(((.....)))..(....)))))))..))) ( -11.50, z-score = 0.09, R) >droSim1.chr2h_random 3155023 57 - 3178526 -----------UCUUCCUUUAUG-CAACGAGCUAAUUCUGUUAAUGUUGAAUGUGCCCUUUCAACUUGU -----------...........(-(.....)).............((((((........)))))).... ( -5.70, z-score = -0.31, R) >droSec1.super_54 45240 69 - 216317 UCUACCUGUGAUUCAAAAUUAUGAGAUCGUACUAAAUUCGCUAGAGUGCCAUGGAACCGUUCGACCUGC .....(((((.((((......))))...(((((...........))))))))))............... ( -7.00, z-score = 1.53, R) >droYak2.chr2R 424891 59 - 21139217 ---------AAUUUUCUUUUAUG-CAACGAGCUACUUCUGUUAAUGUCGAAUGUGCCCUUUCAAUUUGU ---------.............(-((.(((...((....)).....)))....)))............. ( -2.80, z-score = 1.36, R) >droEre2.scaffold_4929 4380682 60 + 26641161 --------AAUUCUUCUUUUAUA-CAGCGAGAUAAUUCUUUUAGUGUAGAGUGUGCUCGUUCUACUUGG --------...............-.((((((...(((((........)))))...))))))........ ( -11.10, z-score = -0.97, R) >anoGam1.chr2L 46536594 61 + 48795086 ----UUGCAGACGUUUUUGUAUG----CGAUACAUUUCGGUAAUCGUAGAAUGGAAGCGUUCUACUUGA ----(((((.(((....))).))----)))(((......)))...((((((((....)))))))).... ( -16.30, z-score = -1.87, R) >triCas2.ChLG10 7281014 61 + 8806720 -------AGGACGAUUGUUGAGUAAAUUUAGAU-GUUCUAAAAAUGUUGAAUGGAAACGCUCUAUAAGU -------.......((((.((((...(((((..-...)))))..........(....))))).)))).. ( -9.50, z-score = -1.02, R) >consensus _________GAUUUUCUUUUAUG_CAUCGAGCUAAUUCUGUUAAUGUAGAAUGGAACCGUUCUACUUGU .............................................((((((((....)))))))).... ( -4.14 = -5.23 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:32 2011