| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 2,364,480 – 2,364,546 |
| Length | 66 |
| Max. P | 0.619634 |
| Location | 2,364,480 – 2,364,546 |
|---|---|
| Length | 66 |
| Sequences | 5 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 55.32 |
| Shannon entropy | 0.82290 |
| G+C content | 0.45404 |
| Mean single sequence MFE | -14.48 |
| Consensus MFE | -5.92 |
| Energy contribution | -7.12 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.56 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.619634 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 2364480 66 + 3288761 AGAGGUGGAAUCGAACCAUGAAAGAUAUGCGUUCGCUGCCAACUUCGCGAGAAGCAUUGAGGAAAA .(((((((...(((((((((.....)))).)))))...)).)))))((.....))........... ( -17.70, z-score = -1.42, R) >droSec1.super_83 40827 66 - 109685 AGAGGUAGAAUCGAACCAUGAAUGAUAUGCGUUCGCUUCCAGCUUCGCGAGGAGCGUGGAGGAAAA ...........(((((((((.....)))).)))))(((((((((((....))))).)))))).... ( -23.80, z-score = -2.81, R) >droYak2.chr2L_random 3208684 66 - 4064425 AGAGGUAGAAUCGAACCAUGAAAGAUAUGCGUUCGUUGCAAGCUUCGCGAGGAUCAUGGAGGAAAA ...............((((((......((((.....))))...(((....)))))))))....... ( -13.70, z-score = -0.20, R) >dp4.Unknown_group_654 1438 64 + 9628 GGAAUUGCAAUCUAAUAACAUUCGGGCCCAAUUUGCCUACCAAUUCAGCGGCCCCAGAAAUUCA-- .......................((((((...(((.....)))....).)))))..........-- ( -9.30, z-score = 0.77, R) >droMoj3.scaffold_6497 150900 56 + 329937 AGAAGUUGGUGCAAACCAUGAACGUUAUACUUAUGCCUCGCAUUUUGCAAAAGGUU---------- ....(((.(((.....))).)))...........((((.((.....))...)))).---------- ( -7.90, z-score = 0.85, R) >consensus AGAGGUAGAAUCGAACCAUGAAAGAUAUGCGUUCGCUUCCAACUUCGCGAGAAGCAUGGAGGAAAA .(((((((((.(((((((((.....)))).))))).)))).))))).................... ( -5.92 = -7.12 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:31 2011