| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 2,354,056 – 2,354,140 |
| Length | 84 |
| Max. P | 0.876467 |
| Location | 2,354,056 – 2,354,140 |
|---|---|
| Length | 84 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 60.66 |
| Shannon entropy | 0.53369 |
| G+C content | 0.49613 |
| Mean single sequence MFE | -24.97 |
| Consensus MFE | -14.69 |
| Energy contribution | -14.03 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.876467 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 2354056 84 - 3288761 GGUUCUAAGGGAAUA--GUAGGAACAAU-----GGGGGUAGAUCGAUCUCCAAAU---GGGUCGGGAAGCGGAUCGAGUGUCGCUUGUCCGAUU .(((((.........--...)))))..(-----((((((......)))))))...---.(((((((((((((........)))))).))))))) ( -24.70, z-score = -1.10, R) >droSec1.super_92 133727 91 - 152088 GGUUCUAAUGGAAUACGGUUGGACUGAUUAAAAUGGGGUAGAACGAUCUCCUGAU---GGGUCGGCAAACGGACCGAGUGUCGUUUGUCCGAUU ((....((((..((.(((((.(.((((((...((.(((.(((....)))))).))---.))))))....).))))).))..))))...)).... ( -24.40, z-score = -0.13, R) >droAna3.scaffold_13137 771711 71 - 1373759 ------------------UCGGGAAGAU-----GGGGAUAGACCGGUCUCCAGAUAAAGGAGCUGCAAACAGUUCCAAUUCCUGUUGUCCGAUU ------------------.((((((..(-----((((((......)))))))......(((((((....)))))))..)))))).......... ( -25.80, z-score = -2.50, R) >consensus GGUUCUAA_GGAAUA__GUAGGAAAGAU_____GGGGGUAGAACGAUCUCCAGAU___GGGUCGGCAAACGGAUCGAGUGUCGCUUGUCCGAUU .................((((((..........((((((......))))))........((((.(....).))))............)))))). (-14.69 = -14.03 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:30 2011