| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 2,352,279 – 2,352,360 |
| Length | 81 |
| Max. P | 0.901857 |
| Location | 2,352,279 – 2,352,360 |
|---|---|
| Length | 81 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 65.78 |
| Shannon entropy | 0.52780 |
| G+C content | 0.34539 |
| Mean single sequence MFE | -19.32 |
| Consensus MFE | -9.76 |
| Energy contribution | -9.57 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.901857 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 2352279 81 - 3288761 UGGUUCUACUUUGAACUAUACAGCAUAG-AACAGUACUUUGCUGUGUAGAAUUGGACACUCACU-UAAUUUUUUUAGUACCAA------------- ((((.(((.......((((((((((.((-.......)).))))))))))((((((........)-)))))....))).)))).------------- ( -20.20, z-score = -2.61, R) >droSec1.super_70 52199 81 - 171677 UGGUUCUAGUUUGAAUUAUAUAGCAUAG-AACAGUACUUUGCUGUGUAGAAUUUGACGCUCACU-UAAUUUUUUUAGAACCAA------------- (((((((((...((((((...(((....-.(((((.....)))))((........)))))....-))))))..))))))))).------------- ( -21.10, z-score = -3.20, R) >droYak2.chrX 20983951 96 - 21770863 UGGUUCCACAUUUAGUUACGCAGCCUAGAAACUGUAAUUUGCUGCGAAAUAGUUGACACUUACUCUAGUUGAUGCACAAACUAUUUGUAGAAGAAA ...(((.(((..(((((.((((((................)))))).....((..((..........))..)).....)))))..))).))).... ( -19.59, z-score = -0.54, R) >droEre2.scaffold_4784 24798320 96 - 25762168 UGGUUCCACAUUGAAUUACGUAUCCUAGAAACUCUACUUUGCUGCGUAAGAUUUGGCUUUUACUCCAGUUGAUGCACAAACCGUUUUUAAAUGCAA ((((((......)))))).((((..(((((((.....((((.(((((.....((((........))))...)))))))))..))))))).)))).. ( -16.40, z-score = -0.23, R) >consensus UGGUUCCACAUUGAAUUACACAGCAUAG_AACAGUACUUUGCUGCGUAAAAUUUGACACUCACU_UAAUUGAUGCACAAACAA_____________ ...............((((((((((.((........)).))))))))))............................................... ( -9.76 = -9.57 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:30 2011