| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 2,351,723 – 2,351,779 |
| Length | 56 |
| Max. P | 0.656488 |
| Location | 2,351,723 – 2,351,779 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 57.80 |
| Shannon entropy | 0.69891 |
| G+C content | 0.48704 |
| Mean single sequence MFE | -13.00 |
| Consensus MFE | -4.80 |
| Energy contribution | -4.67 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.656488 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 2351723 56 + 3288761 CUUUCUGCUUCCAGCGGAAUCUGCCAGUAUCCUUCUCCUCGGUGCACA--GUUUAUUU ..((((((.....)))))).(((...(((.((........))))).))--)....... ( -9.80, z-score = -0.70, R) >droYak2.chr2h_random 3223120 58 - 3774259 AUUUCCGCUUCCAGCGGAAUCUGCCAGUGUCCGUCCUUGCAGUCCAUGCUGCUUAUUU ..((((((.....))))))...................(((((....)))))...... ( -14.50, z-score = -2.14, R) >droPer1.super_6335 1046 56 - 1686 CUGUCCCGGGCCAUUGGUAUCUGCCAGUACCCGUUUUUCAGGUCCAGGGUCGUGAU-- ..(.((((((((((((((....))))))....(.....).))))).))).).....-- ( -18.70, z-score = -1.50, R) >triCas2.chrUn_107 58532 53 + 64617 CUUUCUUCGGCGAGAGGAACUUGCCAAUAUCCUUGUUUCAAAUCAAUUUUAGA----- ........((((((.....))))))............................----- ( -9.00, z-score = -0.50, R) >consensus CUUUCCGCGGCCAGCGGAAUCUGCCAGUAUCCGUCUUUCAAGUCCAUG_UGGUUAU__ ..((((((.....))))))....................................... ( -4.80 = -4.67 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:29 2011