| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 2,350,520 – 2,350,577 |
| Length | 57 |
| Max. P | 0.768262 |
| Location | 2,350,520 – 2,350,577 |
|---|---|
| Length | 57 |
| Sequences | 3 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 58.86 |
| Shannon entropy | 0.60252 |
| G+C content | 0.34007 |
| Mean single sequence MFE | -11.37 |
| Consensus MFE | -4.03 |
| Energy contribution | -4.03 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.768262 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 2350520 57 + 3288761 --GAUUAUACAUCAGAUGAUGUUUAAUCAAAGGAAAGCCUAGAAACAAAAUUUUUUAGU --(((((.(((((....))))).)))))..........(((((((......))))))). ( -12.70, z-score = -3.77, R) >droPer1.super_128 86298 59 - 112355 AAGUAAUUACAUCAUUCGAUGUGAGAUCAGAGGCCAGCCGUGAGACAAAAACUUGUCGU ......(((((((....)))))))..(((..((....)).)))(((((....))))).. ( -14.60, z-score = -2.06, R) >droWil1.scaffold_181144 288266 51 - 290139 --------ACAUCAUCUGAUGUAGCAUCAUGAAGAAGUCUCGAAACAAAAAUGUGUUUU --------((.((.(((((((...))))).)).)).))...((((((......)))))) ( -6.80, z-score = 0.27, R) >consensus __G____UACAUCAUAUGAUGUAAAAUCAAAGGAAAGCCUAGAAACAAAAAUUUGUAGU ........(((((....)))))..................................... ( -4.03 = -4.03 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:28 2011