| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 2,333,171 – 2,333,234 |
| Length | 63 |
| Max. P | 0.980679 |
| Location | 2,333,171 – 2,333,234 |
|---|---|
| Length | 63 |
| Sequences | 5 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 50.59 |
| Shannon entropy | 0.84534 |
| G+C content | 0.40307 |
| Mean single sequence MFE | -12.78 |
| Consensus MFE | -4.92 |
| Energy contribution | -5.32 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.05 |
| SVM RNA-class probability | 0.980679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 2333171 63 - 3288761 -----------CGGAUAUCUCUGUGGAACGCAAAUGGCGUUUCACGGCAUACACAAGAGCUCACACAGUUCAUU -----------.(..(((..(((((((((((.....))))))))))).)))..)..(((((.....)))))... ( -20.80, z-score = -4.18, R) >dp4.Unknown_group_243 19035 74 - 20372 UGAUUUCUCUAAAUAUAUCUUUCUGGAAUGCGAAUGGCAUUUUACAGCACAAAUACGAGCUCUUGCAUUUCCUU ........................(((((((((..(((....................))).)))))))))... ( -9.85, z-score = 0.07, R) >droVir3.scaffold_12954 149189 59 + 2014198 ---------------UUAAGGAUCGGGACGCAGAUGGCCUUAACAGAAAAAUCCAGGAACGUAGGACUUUUCUC ---------------(((((((((........)))..)))))).((((((.(((.........))).)))))). ( -11.50, z-score = -0.26, R) >anoGam1.chr3R 41496503 63 - 53272125 -----------ACAGUUUCCUACUGGAAUGCACAUAGCAUUUCAAAGAAAAAACUAGACCUAAUUAAUUUUCUC -----------..(((((.....((((((((.....))))))))......)))))................... ( -10.40, z-score = -2.23, R) >triCas2.chrUn_101 47703 63 + 68148 -----------CAAAUAGCGUACUGGAACGCAAACGGAGUUCAGAACAAAAAAGCAGAACUCAGCUUCUUUCUA -----------......((((......)))).....((((((..............))))))............ ( -11.34, z-score = -0.80, R) >consensus ___________AAAAUAUCGUACUGGAACGCAAAUGGCAUUUAAAAGAAAAAACAAGAACUCAGGAAUUUUCUC .......................((((((((.....)))))))).............................. ( -4.92 = -5.32 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:27 2011