| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 2,269,052 – 2,269,105 |
| Length | 53 |
| Max. P | 0.567412 |
| Location | 2,269,052 – 2,269,105 |
|---|---|
| Length | 53 |
| Sequences | 3 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 56.25 |
| Shannon entropy | 0.59946 |
| G+C content | 0.53559 |
| Mean single sequence MFE | -17.30 |
| Consensus MFE | -5.15 |
| Energy contribution | -4.17 |
| Covariance contribution | -0.98 |
| Combinations/Pair | 1.73 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.567412 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 2269052 53 + 3288761 --GGAGGCAAAAAGGUUGGCUUCAUGCCAAAACUGCCUUCGAGGUGGUCAUCACC --(((((((......(((((.....)))))...)))))))..((((.....)))) ( -20.70, z-score = -2.85, R) >droAna3.scaffold_13230 1216658 50 - 3602488 --CGAAGUUAGGCGACUGGAUUUAUGCCGUAAGUGCCUUGGAUCUGGGCACC--- --........((.(.(..((((((.(((....).))..))))))..).).))--- ( -13.40, z-score = -0.69, R) >anoGam1.chrU 17683437 52 - 59568033 GCCAAGGUGAAGGAGUUGAAACUGUGUUACAACUGCCUUCGACCCGGUCACC--- (((..(((((((((((((.(((...))).))))).))))).))).)))....--- ( -17.80, z-score = -2.23, R) >consensus __CGAGGUAAAGAGGUUGGAUUUAUGCCAAAACUGCCUUCGACCUGGUCACC___ ..((((((...((...(((.......)))...))))))))............... ( -5.15 = -4.17 + -0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:26 2011