| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 2,267,402 – 2,267,464 |
| Length | 62 |
| Max. P | 0.965583 |
| Location | 2,267,402 – 2,267,464 |
|---|---|
| Length | 62 |
| Sequences | 3 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 58.06 |
| Shannon entropy | 0.58164 |
| G+C content | 0.37957 |
| Mean single sequence MFE | -16.17 |
| Consensus MFE | -6.63 |
| Energy contribution | -6.53 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.62 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.965583 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 2267402 62 + 3288761 GAGAGG-AACUUUCCUCUUUUAACUGUCAGCCUUGUGGUCUGGCAGAGUAAGUAAUAAAAAUA ((((((-(....)))))))....(((((((((....)).)))))))................. ( -21.20, z-score = -3.65, R) >droEre2.scaffold_4929 22294759 59 + 26641161 GAGAGGUAACUUUCCGCUUUUAACCGCUAGUCUUGUAGUCUAGCGGAGUAA-UAGUUUAA--- (((((....))))).(((.(((.(((((((.(.....).)))))))..)))-.)))....--- ( -18.20, z-score = -2.48, R) >droYak2.chrU 1878765 58 - 28119190 -UAAGGUAAGGGUCCUCCUUACAAUAGAAACAUUCUAGUGGAG-GUAGAAAAAAAAACAA--- -............(((((......((((.....))))..))))-)...............--- ( -9.10, z-score = -0.41, R) >consensus GAGAGGUAACUUUCCUCUUUUAACUGCAAGCCUUGUAGUCUAGCGGAGUAA_UAAUAAAA___ .(((((..........)))))..(((((((.(.....).)))))))................. ( -6.63 = -6.53 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:25 2011