| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 2,246,925 – 2,246,980 |
| Length | 55 |
| Max. P | 0.913966 |
| Location | 2,246,925 – 2,246,980 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 88.91 |
| Shannon entropy | 0.20151 |
| G+C content | 0.53455 |
| Mean single sequence MFE | -18.78 |
| Consensus MFE | -14.34 |
| Energy contribution | -14.54 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.913966 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 2246925 55 - 3288761 GACUGUCCGCAAUUGGUUCCGUGGCUGUAUCGCACAGCCAAGGACCUAGCUUCAG ..(((...((....(((.((.(((((((.....))))))).)))))..))..))) ( -20.40, z-score = -2.71, R) >droSim1.chrU 5058474 55 - 15797150 GACUGUCCGCAGUUGGUUCCGAAGCUGUAUCGCACAGCCGAGGAGCUAGCUUCAG ........(.((((((((((...(((((.....)))))...)))))))))).).. ( -21.60, z-score = -2.45, R) >droSec1.super_76 55171 55 + 142355 GAUUGUCCGCAAUUGAUUCCGAGGUUGUAUCGCACAGCCAAGGAGCUAGCUUAAG (((((....)))))..((((..((((((.....))))))..)))).......... ( -13.90, z-score = -1.20, R) >droYak2.chrU 13003896 55 - 28119190 GACUGUCCGCAUUUGGUUCCAAAGCUGUAUCGCACAGCUAAGGGGCUAGCUUCAG ..(((...((...(((((((..((((((.....))))))..)))))))))..))) ( -18.30, z-score = -2.03, R) >droEre2.scaffold_4929 3203524 55 + 26641161 GACUGUCCGAAUUUGGUUCCGAAGCUGUAUCGCACAGCCAAGGAACUAGCUUCAG ........(((.((((((((...(((((.....)))))...)))))))).))).. ( -19.70, z-score = -3.33, R) >consensus GACUGUCCGCAAUUGGUUCCGAAGCUGUAUCGCACAGCCAAGGAGCUAGCUUCAG ............((((((((..((((((.....))))))..))))))))...... (-14.34 = -14.54 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:24 2011