| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 2,211,765 – 2,211,829 |
| Length | 64 |
| Max. P | 0.975113 |
| Location | 2,211,765 – 2,211,829 |
|---|---|
| Length | 64 |
| Sequences | 6 |
| Columns | 68 |
| Reading direction | reverse |
| Mean pairwise identity | 58.08 |
| Shannon entropy | 0.76784 |
| G+C content | 0.51667 |
| Mean single sequence MFE | -13.55 |
| Consensus MFE | -7.25 |
| Energy contribution | -7.08 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.57 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.92 |
| SVM RNA-class probability | 0.975113 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 2211765 64 - 3288761 GAAGAGGGUUCUUAACUCCUCCCCCCUCAAG-AUCUGCGUCC-CGCAGAUUAGUGAGCCU-UGUUCA- (((.(((((((...(((.............(-(((((((...-)))))))))))))))))-).))).- ( -20.41, z-score = -2.96, R) >droSim1.chr3L 2988948 54 + 22553184 -----------UUAACUCCUGCCCCUUUAUG-AUCUGCGCCC-CGCAGACUAAGUAGCCUAGGUAAG- -----------......(((((..(((...(-.((((((...-))))))).)))..))..)))....- ( -12.30, z-score = -1.81, R) >droEre2.scaffold_4845 2168651 63 - 22589142 GGAGAGGGUUCAUAACUCCUCCCCAUUC-AG-GUCUGCGUCC-CGCAGAUUAUAGGGCUU-UGGGUG- ((((.((((.....))))))))(((.((-.(-(((((((...-))))))))....))...-)))...- ( -19.40, z-score = -0.34, R) >droAna3.scaffold_13260 1733194 56 + 2125536 -------GGUGAUAACUCCCCCCCCUCUAAAAGUCAGCGUCC-CGCAGAUCAAUUGGC---AGAAUG- -------((.((....))))....((((((..(((.(((...-))).)))...)))).---))....- ( -5.90, z-score = 0.94, R) >droMoj3.scaffold_6498 1847462 57 - 3408170 ---------UCUUAACUCUUCCCCAUCUAAAUAUCUGCGUCC-CGCAGAUCAGGGUGCAUAUGUCCA- ---------..............(((((....(((((((...-)))))))..)))))..........- ( -11.20, z-score = -1.90, R) >droGri2.scaffold_14906 13489288 68 - 14172833 GAUGAUGGAUGUUAACUCCUCCCCCUUUAAAUGCGGACGUCCUCGGACGCGAUGUAGAAUCUUGUUUC ...((.(((((((..(................)..)))))))))(((((.(((.....))).))))). ( -12.09, z-score = 0.43, R) >consensus _______G_UCUUAACUCCUCCCCCUUUAAA_AUCUGCGUCC_CGCAGAUUAAGGAGCAU_UGUAUG_ ................................(((((((....))))))).................. ( -7.25 = -7.08 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:23 2011