| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,112,677 – 2,112,732 |
| Length | 55 |
| Max. P | 0.982159 |
| Location | 2,112,677 – 2,112,732 |
|---|---|
| Length | 55 |
| Sequences | 3 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 70.59 |
| Shannon entropy | 0.41004 |
| G+C content | 0.50064 |
| Mean single sequence MFE | -12.20 |
| Consensus MFE | -7.33 |
| Energy contribution | -8.00 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.10 |
| SVM RNA-class probability | 0.982159 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2112677 55 + 23011544 UCUUAACUCCUCCCC-CCUCAAGAUCUGCGUCCCGCAGAUUAGUGAGCCU-UGUUCA ...............-.((((.((((((((...))))))))..))))...-...... ( -13.30, z-score = -3.61, R) >droSim1.chr3L 19564182 54 + 22553184 --UUAACUCCUGCCC-CUUUAUGAUCUGCGCCCCGCAGACUAAGUAGCCUAGGUAAG --......(((((..-(((...(.((((((...))))))).)))..))..))).... ( -12.30, z-score = -1.81, R) >droMoj3.scaffold_6498 819659 57 - 3408170 UCUUAACUCUUCCUCAUCUAAAUAUCUGCGUCCCGCAGAUCAGGGUGCAUAUGUCCA ..............(((((....(((((((...)))))))..))))).......... ( -11.00, z-score = -1.86, R) >consensus UCUUAACUCCUCCCC_CCUAAAGAUCUGCGUCCCGCAGAUUAGGGAGCCUAUGUACA ......................((((((((...))))))))................ ( -7.33 = -8.00 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:12 2011