Locus 2916

Sequence ID dm3.chr2RHet
Location 2,167,200 – 2,167,314
Length 114
Max. P 0.731409
window4013

overview

Window 3

Location 2,167,200 – 2,167,314
Length 114
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 57.60
Shannon entropy 0.57728
G+C content 0.44460
Mean single sequence MFE -28.77
Consensus MFE -11.04
Energy contribution -12.60
Covariance contribution 1.56
Combinations/Pair 1.10
Mean z-score -1.74
Structure conservation index 0.38
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.53
SVM RNA-class probability 0.731409
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2RHet 2167200 114 + 3288761
CCCA-GCGAUCUCAAGUGAUCACUACACUUUGUUGCAAUGC-CAACUCAUCA-UUGGACAGGAUGUCAAUUGCGACAGUUCGGAUGAA---CAACUGGAACUGCAAGAAUGCUUAUGUUG
.(((-(.((((......)))).........(((((((((..-.....((...-.))(((.....))).)))))))))((((....)))---)..))))(((.(((....)))....))). ( -26.60, z-score =   0.15, R)
>droEre2.scaffold_4845 1029633 102 + 22589142
CGCACAUAAGCCGAACGGAACGUACCAUUCUGUUGCAAUGCAUUCUGUUGCACUUUGACAGGAUGUCGAUUGCGACAUUUCUCGCCGA-AGAAACUAGAACUG-----------------
.((......)).(((.((......)).)))(((((((((((((((((((.......))))))))))..)))))))))(((((......-))))).........----------------- ( -26.60, z-score =  -1.36, R)
>droYak2.chr2h_random 3013004 101 + 3774259
CUCACUUGAGC--AAUGGAAUGUAUUACAAUGUUGCAAGUGCCGACACAGCACUUUGACAGGAUGUCCAUUGCGACAGUUCUUAUAAACAGAAAUGAGAACUG-----------------
.........((--((((((...((((....(((((.((((((.......))))))))))).))))))))))))..((((((((((........))))))))))----------------- ( -33.10, z-score =  -4.00, R)
>consensus
CCCACAUGAGC__AACGGAACGUAACACUAUGUUGCAAUGC_CAACACAGCACUUUGACAGGAUGUCAAUUGCGACAGUUCUCAUAAA_AGAAACUAGAACUG_________________
...............................((((((((.................(((.....))).))))))))(((((((((........))))))))).................. (-11.04 = -12.60 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:20 2011