| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 2,145,057 – 2,145,135 |
| Length | 78 |
| Max. P | 0.978520 |
| Location | 2,145,057 – 2,145,135 |
|---|---|
| Length | 78 |
| Sequences | 4 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 49.06 |
| Shannon entropy | 0.80827 |
| G+C content | 0.51877 |
| Mean single sequence MFE | -22.52 |
| Consensus MFE | -11.27 |
| Energy contribution | -12.53 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.43 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.00 |
| SVM RNA-class probability | 0.978520 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 2145057 78 + 3288761 UUGUCGAAGCGGCUUUGGCGGGGAAUCGCCGAGGGUUAAUGCUGAGGCGGUAACUCGCGC-AAAAUCAGAGAAUCCAGA----- ..........(..(((((((((..((((((...(((....)))..))))))..))))).)-)))..)............----- ( -25.40, z-score = -0.71, R) >droEre2.scaffold_4929 21776436 71 + 26641161 -----UUGUCGGCUUUGGCGGGGGACCGCCGAGGGUGAAUGCUGAGGCGGUAACUCCUCC-CCCCUCAGACUGAAUC------- -----...(((.(((((((((....))))))))).)))...((((((.((.........)-).))))))........------- ( -33.60, z-score = -2.46, R) >droYak2.chr2L_random 2368308 79 - 4064425 -----UUGUCGAGCUCAUAGAGGACUAGCCGAAAAUUACAAACAAAUCAAUAGAUUAUAUUAUUGGCCAAUUUUAUUUACCAGA -----..(((...(((...))))))..(((((.(((........((((....))))..))).)))))................. ( -6.20, z-score = 1.05, R) >droSec1.super_76 56547 68 - 142355 UUGUCAAGGCGUCUUUGGCGAGGGACCGCCGAGGGUGAAUGCUGAGGCGGUAACUUGCGC-AUAAACAG--------------- ..((....))((...(((((((..((((((...(((....)))..))))))..))))).)-)...))..--------------- ( -24.90, z-score = -1.85, R) >consensus _____UAGGCGGCUUUGGCGAGGAACCGCCGAGGGUGAAUGCUGAGGCGGUAACUCGCGC_AUAAUCAGA_U_UAU________ .................(((((..((((((...(((....)))..))))))..))))).......................... (-11.27 = -12.53 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:18 2011