| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 2,071,877 – 2,071,971 |
| Length | 94 |
| Max. P | 0.995266 |
| Location | 2,071,877 – 2,071,971 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 51.03 |
| Shannon entropy | 0.69071 |
| G+C content | 0.37171 |
| Mean single sequence MFE | -20.03 |
| Consensus MFE | -11.17 |
| Energy contribution | -10.63 |
| Covariance contribution | -0.54 |
| Combinations/Pair | 1.61 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.78 |
| SVM RNA-class probability | 0.995266 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 2071877 94 + 3288761 GCCAGUAUUUCGAGUAUGAGACGUUUAAAAAAUUAUAAUAAAGCUGACUGCGAGUCUGGGCCCAUACUUCGAGUAUGAUGCG--UUAAAAAAAAAA-- ((..((((((.(((((((((((.((((...........))))((.....))..)))).....))))))).))))))...)).--............-- ( -16.10, z-score = -0.23, R) >droYak2.chrX_random 921581 91 - 1802292 -----CAGCUAAAAAAAAAAGAGAGUAAGUGA--AGAAUCAAGCUGUCUUCGAGUCGGGGCCUAUACUAAGAGUAUGUGGUGAUUUGAAAAAAAAAGA -----...............((.(((...(((--....))).))).))((((((((...((((((((.....))))).)))))))))))......... ( -17.90, z-score = -1.87, R) >droSim1.chrU 3369927 87 - 15797150 -GUGACAGUGUCAAGAGACACAGAUUUUAUUAU--UGUUCUAUCUGACUU-GGGUCAGGGGCUGUACUAAAUGUACAAGCCGAGUAAAUAA------- -......(((((....)))))....((((((..--.......((((((..-..))))))((((((((.....)))).)))).))))))...------- ( -26.10, z-score = -2.66, R) >consensus _____CAGUUAAAAAAAAAAAAGAUUAAAUAAU_AUAAUCAAGCUGACUUCGAGUCAGGGCCUAUACUAAGAGUAUGAGGCGA_UUAAAAAAAAAA__ .......(((((....)))))......................(((((.....))))).((((((((.....))))).)))................. (-11.17 = -10.63 + -0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:15 2011