| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,968,399 – 1,968,497 |
| Length | 98 |
| Max. P | 0.757693 |
| Location | 1,968,399 – 1,968,497 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 55.92 |
| Shannon entropy | 0.68749 |
| G+C content | 0.59854 |
| Mean single sequence MFE | -38.52 |
| Consensus MFE | -15.43 |
| Energy contribution | -18.05 |
| Covariance contribution | 2.62 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.757693 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1968399 98 - 3288761 ------------GACCCCGGCCUCAGAGGGGCUUCCAGGGCUCGCAAGGUGCAGUCCCUCAAAAUUAAUGGGCAAUCUGAAGGCGGAAGAAAGACUGCCCGCCACAGUUC--- ------------......(((....((((((((....(.((.(....))).))))))))).........(((((.(((.....(....)..))).)))))))).......--- ( -36.80, z-score = -1.04, R) >dp4.Unknown_group_391 8908 101 + 17965 ------------GACCCACGCCGCGGAGUGCCGUGCCAGGGUCGCAAGAAACGGUCCCUCAAGCCUAGUCGGCAGGCUGACCAGCGAGGAGGAGCAGUUAUCCGCAGUAGUGG ------------...((((((.(((((.(((...(((.(..((....))..)))).((((..((...(((((....)))))..))...)))).)))....))))).)).)))) ( -39.80, z-score = -1.03, R) >droPer1.super_2 134381 113 - 9036312 GGCAUGGCAGUGCUGCCACGCCGCGGAGGGCCGUGCCAGGGUCGCAAGAAACGGUCCCUCAAGCCUAGUCGGCAGGCUGACCAGCGAGGAGGAGCAGUUAUCCGCAGUAGUGG (((.(((((....))))).)))(((((..((.((.((.(..((....))..)....((((..(((.....)))..(((....))))))).)).)).))..)))))........ ( -49.70, z-score = -1.15, R) >droWil1.scaffold_181155 3205423 101 + 3442787 ------------GGUUCCAGCCUAUGAGGUCAGAGCAGGAACCAAGCCAACCAGCACCUCAAAAUUGAUAGGACAGCUAAUAGAGGAGGAGGACCAUCUGUUAGCAAUGAUAG ------------((((((.((...((....))..)).))))))..((......)).(((((....)))..))...(((((((((((.......)).)))))))))........ ( -27.80, z-score = -1.60, R) >consensus ____________GACCCACGCCGCGGAGGGCCGUGCAAGGGUCGCAAGAAACAGUCCCUCAAAACUAAUCGGCAAGCUGACCAGCGAGGAGGAGCAGCUAUCCGCAGUAGUGG ............((((((.((.((((....)))))).))))))..........((.((((....((.(((((....))))).))....)))).)).................. (-15.43 = -18.05 + 2.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:14 2011