| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,097,957 – 2,098,069 |
| Length | 112 |
| Max. P | 0.870470 |
| Location | 2,097,957 – 2,098,069 |
|---|---|
| Length | 112 |
| Sequences | 9 |
| Columns | 140 |
| Reading direction | reverse |
| Mean pairwise identity | 70.42 |
| Shannon entropy | 0.54469 |
| G+C content | 0.44901 |
| Mean single sequence MFE | -36.30 |
| Consensus MFE | -11.11 |
| Energy contribution | -12.21 |
| Covariance contribution | 1.10 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.870470 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2097957 112 - 23011544 UUCGUUGGCCACUUUUUGGCUA---GCCGGCUGAUGA-----CAGUGGCUGGCC--AAAAGGGAG-------AAUCAAUAAUUCAA----UGCCAGCUUUGAAUGCGCUUUGAGC-GCAUUACAUUUAAUCAGA------ ...((((((..(((((((((((---((((.(((....-----))))))))))))--))))))..(-------(((.....))))..----.))))))..(((((((((.....))-))))).))..........------ ( -48.60, z-score = -5.34, R) >droSim1.chr2L 2068964 112 - 22036055 UUCGUUGGCCACUUUUUGGCUA---GCCGGCUAAUGA-----CCGUGGCUGGCC--AAAAGGGAG-------CAUCAAUAAUUCAA----UGCCAGCUUUGAAUGCGCUUUGAGC-GCAUUACAUUUAAUCAGA------ ...((((((..(((((((((((---((((((....).-----))..))))))))--))))))(((-------.........)))..----.))))))..(((((((((.....))-))))).))..........------ ( -42.80, z-score = -3.44, R) >droSec1.super_14 2044312 112 - 2068291 UUCGUUGGCCACUUUUUGGCUA---GCCGGCUAAUGA-----CCGUGGCUGGCC--AAAAGGGAG-------CAUCGAUAAUUCAA----UGCCAGCUUUGAAUGCGCUUUGAGC-GCAUUACAUUUAAUCAGA------ ...((((((..(((((((((((---((((((....).-----))..))))))))--))))))...-------....((....))..----.))))))..(((((((((.....))-))))).))..........------ ( -44.30, z-score = -3.75, R) >droYak2.chr2L 2085770 108 - 22324452 --CGUUGGCCAC-UUUUGGCUA---GCCGGCUAAUGA-----CCGUGGCUGGCC-GAAAAGGGAG-------CAUCAAUAAUUCAU----U--CAGCUUUGUAUGCGCUUUGAGC-GCAUUACAUUUAAUCAGA------ --.(.((.((..-(((((((((---((((((....).-----))..))))))))-))))..))..-------)).)..........----.--......(((((((((.....))-))).))))..........------ ( -34.90, z-score = -1.53, R) >droEre2.scaffold_4929 2149000 104 - 26641161 ------GGCAACUUUUUGGCUA---GCCGGCUAAUGA-----CCGUGGCUGACC--AAAAGGGAG-------CAUCAAUAAUUCAU----U--CAGCUUUGAAUGCGCUUUGAGC-GCAUUACAUUUAAUCAGA------ ------.((..((((((((.((---((((((....).-----))..))))).))--))))))..)-------).............----.--......(((((((((.....))-))))).))..........------ ( -31.80, z-score = -2.03, R) >droAna3.scaffold_12916 9819581 112 + 16180835 ------GGUCACUUUUUGGCUA---GUUGGCUAAUGA-----CCGUGGCUAUCC--AGCAGUGAC-----ACCAUCAAUAAUUCAAGUUUUGGCAACUUUGAAUGCGCUUUGAGC-GCAUUACAUUUAAUCAGG------ ------.((((((..((((.((---((((((....).-----)))..)))).))--)).))))))-----.((..................(....)..(((((((((.....))-))))).))........))------ ( -28.70, z-score = -0.88, R) >dp4.chr4_group3 8912381 123 - 11692001 ------GGCCAGUUUUUGGCUACAUUCUGGCUAAUGACCCGGCCGUUGGCAGCCCCAGAUGGGCGCCCGACCCAUUAAUAAUUCAA----UCGAAACUUUGAAUGCGCUUUGAGC-GCAUUACAUUUAAUCAGA------ ------((((.(((.(((((((.....))))))).)))..))))(((((..((((.....))))..)))))...............----..((.....(((((((((.....))-))))).)).....))...------ ( -41.60, z-score = -2.88, R) >droPer1.super_8 96783 123 - 3966273 ------GGCCAGUUUUUGGCUACAUUCUGGCUAAUGACCCGGCCGUGGCCAGCCCCAGAUGGGCGCCCGACCCAUUAAUAAUUCAA----UCGAAACUUUGAAUGCGCUUUGAGC-GCAUUACAUUUAAUCAGA------ ------((((.(((.(((((((.....))))))).)))..))))(.(((..((((.....))))))))..................----..((.....(((((((((.....))-))))).)).....))...------ ( -38.80, z-score = -1.99, R) >droGri2.scaffold_15252 223778 112 - 17193109 -----------UUUACAGGCAACUUUUCGACCAAUGG-----AUUUCCACAGUCAAAAAUU-----------AAUAAUUAAAUUGCAUUCACACGACUUU-AAUCUACUUUGACUAAUCAUAUGCCUAAUCGUUGGCAAA -----------.....(((((.............(((-----....))).(((((((....-----------....(((((((((........))).)))-)))....))))))).......)))))............. ( -15.20, z-score = -0.90, R) >consensus ______GGCCACUUUUUGGCUA___GCCGGCUAAUGA_____CCGUGGCUGGCC__AAAAGGGAG_______CAUCAAUAAUUCAA____UGCCAGCUUUGAAUGCGCUUUGAGC_GCAUUACAUUUAAUCAGA______ ......(((((.....))))).....((((((.(((.......))))))))).................................................(((((((.....)).)))))................... (-11.11 = -12.21 + 1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:11 2011