| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,935,671 – 1,935,735 |
| Length | 64 |
| Max. P | 0.990094 |
| Location | 1,935,671 – 1,935,735 |
|---|---|
| Length | 64 |
| Sequences | 4 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 56.04 |
| Shannon entropy | 0.75339 |
| G+C content | 0.47056 |
| Mean single sequence MFE | -13.95 |
| Consensus MFE | -8.05 |
| Energy contribution | -7.42 |
| Covariance contribution | -0.63 |
| Combinations/Pair | 1.75 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.40 |
| SVM RNA-class probability | 0.990094 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1935671 64 - 3288761 -ACUUCUUGUACAGCGCUACCUUGCGCACCGGUCCCUUUGGCUGAUGUACGUCCCUUAACUUUAU -.......(((((((((......))))..(((((.....))))).)))))............... ( -17.30, z-score = -3.09, R) >droSec1.super_118 2426 60 + 72036 AACGGUUUGAAGAGCGAUAAUUUUCUGACUGGCCCACUCGGCC--UCAAUUUUGUCGAAGUU--- ...((((.(((((.......))))).))))((((.....))))--.................--- ( -11.90, z-score = 0.15, R) >dp4.Unknown_group_722 8699 65 - 18478 AGUUUUUGGUAUAACUGUACCUUUCGCACUGGUCCCACUGACACAUGUACAUCGCAUAAUUUUUG .......(((((....)))))....(((.(((((.....))).)))))................. ( -8.10, z-score = 0.55, R) >droVir3.scaffold_13274 108984 62 - 222111 -ACAUUUUGUAUA--GACACCUUACGCACCGGUCCCGUUGGCCGGUGCACCGCCUUAAGCUUUGU -.......(((.(--(....)))))(((((((((.....)))))))))...((.....))..... ( -18.50, z-score = -1.83, R) >consensus _ACUUUUUGUAUAGCGAUACCUUUCGCACCGGUCCCAUUGGCCGAUGUACAUCCCUUAACUUU_U .........................(((.(((((.....))))).)))................. ( -8.05 = -7.42 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:11 2011