| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,901,009 – 1,901,063 |
| Length | 54 |
| Max. P | 0.916663 |
| Location | 1,901,009 – 1,901,063 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 57.56 |
| Shannon entropy | 0.58568 |
| G+C content | 0.34652 |
| Mean single sequence MFE | -10.60 |
| Consensus MFE | -5.88 |
| Energy contribution | -6.10 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.916663 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1901009 54 + 3288761 UCUGAGGAGCUUCAGCUUUUCCUAAGU-AUAAAAAAUAUGCUUGCCAGU--AUAACA-- ...(((((((....))))))).(((((-(((.....)))))))).....--......-- ( -11.90, z-score = -1.61, R) >droSim1.chrU 1207407 54 - 15797150 UCUGAAAAGCUGUAGCUUAUCCUUUGU-AACGGAAUAAAGCUUAUAUGU--AUAACA-- ........((((((((((.(((.....-...)))...)))).)))).))--......-- ( -7.10, z-score = -0.21, R) >droVir3.scaffold_12912 155004 59 + 209597 GUGGAGGAGCUAAAGCACUUCCUAACUGAACAUAAUAUUGAUGUGAUGCUAAUUACAGA ..(((((.((....)).)))))...................((((((....)))))).. ( -12.80, z-score = -1.93, R) >consensus UCUGAGGAGCUAAAGCUUUUCCUAAGU_AACAAAAUAAUGCUUACAUGU__AUAACA__ ...(((((((....)))))))...................................... ( -5.88 = -6.10 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:07 2011