| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,891,992 – 1,892,052 |
| Length | 60 |
| Max. P | 0.720878 |
| Location | 1,891,992 – 1,892,052 |
|---|---|
| Length | 60 |
| Sequences | 3 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 54.89 |
| Shannon entropy | 0.63810 |
| G+C content | 0.57115 |
| Mean single sequence MFE | -21.81 |
| Consensus MFE | -8.79 |
| Energy contribution | -7.70 |
| Covariance contribution | -1.09 |
| Combinations/Pair | 1.72 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.720878 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1891992 60 - 3288761 --GGUGACUGUGUCCCGUCACAAGGAGAAGUGUUGGGUCGCCUUGUUCACGUUUUUGGCGGU --.(((((.(((.((((.(((........))).)))).)))...).))))............ ( -16.50, z-score = 0.01, R) >droAna3.scaffold_13258 805939 60 - 1584923 --GAUGAACGUCGGCAGGCGCAAGGAGAAGAGAUGGGUAGCUCCUUUUACCUGCCUCGCGUU --....(((((.((((((...((((((.............))))))...))))))..))))) ( -22.02, z-score = -1.61, R) >droVir3.scaffold_12941 664079 62 + 746104 GACAUUGUCGUUGGACGGCGUCGCGAGAAGCACUGGGGCGUGCUAUUUGCAUGCCUCACGGU (((.(((((....))))).)))((.....))..((((((((((.....)))))))))).... ( -26.90, z-score = -2.45, R) >consensus __GAUGAACGUCGGCCGGCGCAAGGAGAAGAGAUGGGUCGCCCUAUUUACAUGCCUCGCGGU ......(((((.....(((((...(((.(((((......))))).)))..)))))..))))) ( -8.79 = -7.70 + -1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:06 2011