Locus 2902

Sequence ID dm3.chr2RHet
Location 1,883,444 – 1,883,525
Length 81
Max. P 0.813304
window3995

overview

Window 5

Location 1,883,444 – 1,883,525
Length 81
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 55.26
Shannon entropy 0.70527
G+C content 0.41054
Mean single sequence MFE -22.43
Consensus MFE -9.84
Energy contribution -10.65
Covariance contribution 0.81
Combinations/Pair 1.53
Mean z-score -1.00
Structure conservation index 0.44
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.77
SVM RNA-class probability 0.813304
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2RHet 1883444 81 - 3288761
------UUGAUUAUUGCUAUC---------GGAGUAUGGUCUAUUAUUCCAAUUCUGUGAGAAUCCGGGCUGCAUGAGCAGUCGAAUUCGCUUAGG
------..(((.......)))---------((((((........))))))....(((...((((.(((.((((....))))))).))))...))). ( -19.60, z-score =  -0.27, R)
>droSim1.chrU 13644129 96 + 15797150
UUGAUUUUCGUUAUCAGACUCUGAGUCUGUGGAGUACGGUUUACUAUUUCUGUACCGUGAGAAUGUGGGCUGCAUGAGCAGUCCAAUUCACUUGGA
..............(((((.....)))))(.(((((((((..((.......)))))))..((((.((((((((....)))))))))))))))).). ( -29.30, z-score =  -1.66, R)
>droYak2.chrU 7531078 96 - 28119190
GUGAUUUUCACAAUCGCACUCUGAGUCCGUGGAGUACGGUGUAGUAUUCCUAUUCUGUGAGAAACCGGGCUGCAUGAGCGUUUCAAUUCGCUUAGU
((((((.....))))))....((((((((.(((((((......)))))))..(((.....)))..)))))).))((((((........)))))).. ( -29.40, z-score =  -1.76, R)
>droWil1.scaffold_180949 4378883 79 - 6375548
------UCGAUUGUUGUAAUU-----------GCUAUAAUUUGUUGUUGUUGUUUUGUACGAUCAUUUGCUUCUUGGCCCAUUGAAUGUAUAUAUA
------.((((.((((((...-----------..))))))..)))).........((((((.(((...(((....)))....))).)))))).... ( -11.40, z-score =  -0.31, R)
>consensus
______UUCAUUAUCGCAAUC_________GGAGUACGGUUUAUUAUUCCUAUUCUGUGAGAAUCCGGGCUGCAUGAGCAGUCCAAUUCACUUAGA
..............................((((((........))))))......(((((....((((((((....)))))))).)))))..... ( -9.84 = -10.65 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:06 2011