| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,813,345 – 1,813,406 |
| Length | 61 |
| Max. P | 0.766153 |
| Location | 1,813,345 – 1,813,406 |
|---|---|
| Length | 61 |
| Sequences | 6 |
| Columns | 68 |
| Reading direction | reverse |
| Mean pairwise identity | 68.00 |
| Shannon entropy | 0.57485 |
| G+C content | 0.33275 |
| Mean single sequence MFE | -7.32 |
| Consensus MFE | -3.56 |
| Energy contribution | -3.58 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.766153 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1813345 61 - 3288761 UGAUGAUAACACGUCCUCGUGU---UGCU-UAACUUAAUAUAAACUUCA---UUGUAUUUUUUUGUAC ...((((((((((....)))))---)).)-))....(((((((......---)))))))......... ( -8.50, z-score = -1.40, R) >droSim1.chr2h_random 2696529 61 - 3178526 UGACUAUAACACGUCCUCGUGU---UGCU-UAACUCAACAUAAACUUCA---UUAUAUCUCUUUGUUC ......(((((((....)))))---))..-...................---................ ( -7.00, z-score = -1.97, R) >droSec1.super_143 3538 61 - 77943 UGACUAUAACACGUCCUCGUGU---UGCU-UAACUCAACAUAAACUUCA---UUAUAUCUCUUUAUUC ......(((((((....)))))---))..-...................---................ ( -7.00, z-score = -2.79, R) >droEre2.scaffold_4929 2247950 61 + 26641161 UGACUAUAAAACGACCUUGUGU---UACU-UAAUUCAACAUAAGUUUCA---UUGUACUGCAUUGUUC ............((.(((((((---(...-......))))))))..)).---................ ( -5.90, z-score = 0.49, R) >droAna3.scaffold_13417 5949683 53 - 6960332 --------ACACGUCCUCGUGU---CUAU-AAUCAACAUAUGAAUUUCA---UUCCGCUUUAUAAUUU --------(((((....)))))---.(((-((.......(((.....))---)......))))).... ( -5.82, z-score = -2.12, R) >droPer1.super_85 10869 68 + 242291 UGACUUUCACACGUCCUCGUGUGCAUACUGUAACACUAGGUUAGUAUCAUUCUUGUAUCUUCUUGUAC .......((((((....)))))).((((((...(....)..))))))..................... ( -9.70, z-score = 0.35, R) >consensus UGACUAUAACACGUCCUCGUGU___UGCU_UAACUCAACAUAAACUUCA___UUGUAUCUCUUUGUUC ........(((((....))))).............................................. ( -3.56 = -3.58 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:05 2011