| Sequence ID | dm3.chr2L |
|---|---|
| Location | 224,422 – 224,513 |
| Length | 91 |
| Max. P | 0.738621 |
| Location | 224,422 – 224,513 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 70.60 |
| Shannon entropy | 0.54836 |
| G+C content | 0.54262 |
| Mean single sequence MFE | -33.09 |
| Consensus MFE | -11.70 |
| Energy contribution | -12.44 |
| Covariance contribution | 0.74 |
| Combinations/Pair | 1.70 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.738621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 224422 91 - 23011544 UGCUGCCGUUGCCGAUGUUGUUGUAUCGACGAACUGGAGUU----CUUUGGUGACGAUGGUUG--CUGCGG-CUGCCGCGACGUGAGCAGUAGCGUUG----------- (((((((((..((((.((((......))))((((....)))----).))))..)))...((((--(.((..-..)).)))))....))))))......----------- ( -33.70, z-score = -1.38, R) >droSim1.chr2L 228527 91 - 22036055 UGCUGCCGUUGCCGAUGUUGUUGUAUCGACGAACUGGAGUU----CUUUGGUGACGAUGGUUG--CUGCGG-CUGCCGCGACGUAAGCAGUGGCGUUG----------- .(((((.((.(((...((((((..(((((.((((....)))----).)))))))))))))).)--).))))-).(((((..(....)..)))))....----------- ( -35.20, z-score = -1.82, R) >droSec1.super_14 222298 91 - 2068291 UGCUGCCGUUGCCGAUGUUGUUGUAUCGACGAACUGGAGUU----CUUUGGUGACGAUGGUUG--CUGCGG-CUGCCGCGACGUAAGCAGUGGCGUUG----------- .(((((.((.(((...((((((..(((((.((((....)))----).)))))))))))))).)--).))))-).(((((..(....)..)))))....----------- ( -35.20, z-score = -1.82, R) >droYak2.chr2L 217310 91 - 22324452 UGCUGCCGUUACCGAUGUUGUUGUAUCGACGAACUGGAGUU----CUUUGGUGACGAUGGUAG--CUGCGG-CUGCCGCGACGUAAGCAGCGGCGUUG----------- .(((((.((((((...((((((..(((((.((((....)))----).))))))))))))))))--).))))-).(((((..(....)..)))))....----------- ( -40.40, z-score = -3.29, R) >droEre2.scaffold_4929 270662 91 - 26641161 UGCCGCCGUUGCCGAUGUUGUUGUAUCGACGAACUGGAGUU----CUUUGGUGACGAUGGUUG--CUGCGG-CUGCCGCGACGUAAGCAGUGGCGUUG----------- .(((((.((.(((...((((((..(((((.((((....)))----).)))))))))))))).)--).))))-).(((((..(....)..)))))....----------- ( -37.40, z-score = -2.25, R) >droAna3.scaffold_12943 873263 101 + 5039921 ------UGUUGUUGUUUUUGUUGCAUUGACGAAGUAAAGUUCUUCCUUUGGUGACGAUGAUUG--UUGCGGCCGACGCCGACUGCGGCAGAGAGGUGGUGGCGGCGUUG ------.(((((..(..(..((((((..(.((((.......))))..)..))).)))..)..)--..)))))((((((((.(..(.((......)).)..))))))))) ( -35.00, z-score = -1.65, R) >droWil1.scaffold_180764 107898 77 - 3949147 -GCUGUUCCUGUUAAUGUUGUUGUAUUGACGAAGUGAAGUUCUU-CUUUGGUGACGAUGAUUGUAUUGCGG-CGGCGUUG----------------------------- -...........(((((((((((((...((((((.......)))-).(((....))).....))..)))))-))))))))----------------------------- ( -19.40, z-score = -1.61, R) >droMoj3.scaffold_6500 2452577 77 - 32352404 ------------UGUUGUUGUUGUAUUGACGAA--GUUCUU----CUUUGGUGACGAUGAUUG--UUGCUG-CGGUGGAAGCGGCAGCGGCAACGGCA----------- ------------.(((((((((.(((((.((((--(.....----)))))....)))))...(--((((((-(.......))))))))))))))))).----------- ( -28.40, z-score = -2.56, R) >consensus UGCUGCCGUUGCCGAUGUUGUUGUAUCGACGAACUGGAGUU____CUUUGGUGACGAUGGUUG__CUGCGG_CUGCCGCGACGUAAGCAGUGGCGUUG___________ ............((((((((((((.......................(((....))).........(((((....)))))......))))))))))))........... (-11.70 = -12.44 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:17 2011