| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,751,239 – 1,751,291 |
| Length | 52 |
| Max. P | 0.972870 |
| Location | 1,751,239 – 1,751,291 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 63.54 |
| Shannon entropy | 0.57348 |
| G+C content | 0.50629 |
| Mean single sequence MFE | -16.64 |
| Consensus MFE | -9.12 |
| Energy contribution | -8.72 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.88 |
| SVM RNA-class probability | 0.972870 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1751239 52 + 3288761 CGGUCCAAUUCGCU-UAGUUAUGCAAAAGCUGCCUGCUUGGGUAGCAGUUGAC------------- .....(((((.((.-.......))....(((((((....))))))))))))..------------- ( -14.90, z-score = -0.96, R) >droYak2.chrU 15892994 52 - 28119190 CAGUCCAAUUCGCU-UAGGUCCGAAAAAGCUGUCCGUGUGGGCAGCAGUUGAC------------- ..(((...((((..-......))))...(((((((....)))))))....)))------------- ( -14.70, z-score = -1.49, R) >droSec1.super_94 64493 52 - 93855 CAGUCCAACUCGCU-UAGGUAUGCAAAAGCUGCCUGUGUGGGUGGCAGUUGAC------------- ..(.(((.(((((.-((((((.((....)))))))).))))))))).......------------- ( -19.20, z-score = -2.06, R) >droSim1.chrU 10329448 52 - 15797150 CAGUCCAAUUCACU-UGGAUAUGCAAAAGCUGCCUGUGCGGGUAGCAGUUGAC------------- ..((((((.....)-)))))...(((..(((((((....)))))))..)))..------------- ( -18.80, z-score = -2.54, R) >triCas2.ChLG10 1931880 66 - 8806720 CGGUCACUUUCAUCGCAAUUCUGUCACUUCUGUGUUGACGCGGACUAGUUAACUAAUCGAGUUGCU ..............(((((((.......((((((....)))))).(((....)))...))))))). ( -15.60, z-score = -1.14, R) >consensus CAGUCCAAUUCGCU_UAGGUAUGCAAAAGCUGCCUGUGUGGGUAGCAGUUGAC_____________ ............................(((((((....))))))).................... ( -9.12 = -8.72 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:03 2011