| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,745,902 – 1,745,992 |
| Length | 90 |
| Max. P | 0.999846 |
| Location | 1,745,902 – 1,745,992 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 59.69 |
| Shannon entropy | 0.61658 |
| G+C content | 0.41360 |
| Mean single sequence MFE | -26.47 |
| Consensus MFE | -12.88 |
| Energy contribution | -14.75 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.32 |
| Mean z-score | -3.49 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 4.56 |
| SVM RNA-class probability | 0.999846 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1745902 90 - 3288761 UAAAAUAAAACUGGCGUCCACUCUAACUUAACUAAAGCGAUAAAGCAGGUUUCAAACUGAU------------CUCUCGC-UUUAUCGCAUGAGCUCACAACU ............(((((........)).........(((((((((((((..((.....)).------------.))).))-))))))))....)))....... ( -19.80, z-score = -3.23, R) >droSim1.chr2h_random 2792934 102 + 3178526 UACAACAAAACAAUCGUACGCUCUGAGCGAGUUGAAGCGAUAAAGUUGGUUUCAAACUGCCUCUCUCGCUUUGUUCUUGC-UUUAUCGUUUGAGCUCGCAACU ..........................(((((((.((((((((((((.((...((((..((.......))))))..)).))-)))))))))).))))))).... ( -31.80, z-score = -3.13, R) >droYak2.chr2L_random 1362444 84 + 4064425 ------AAAACAAUCGUACGCUCUGAGCGAGUUGAAGCGAUAAAGCAGGUUGCAAACUGCU------------CUCUAGC-UUUAUCGCUUGAGCUCGCUACU ------...................((((((((.(((((((((((((((..((.....)).------------.))).))-)))))))))).))))))))... ( -38.00, z-score = -5.34, R) >droMoj3.scaffold_6500 2343556 73 + 32352404 -----------------AUACGAAAAUCUUUAUUACGCGAUAAAGCA-UUUCAGAAAUGCU------------UUCUCGCAAUUGUCGCUUUGGCUCUCUUCU -----------------....(((............((((.((((((-((.....))))))------------)).)))).......((....))....))). ( -16.30, z-score = -2.27, R) >consensus ______AAAACAAUCGUACACUCUAAGCGAGUUGAAGCGAUAAAGCAGGUUUCAAACUGCU____________CUCUCGC_UUUAUCGCUUGAGCUCGCAACU ..........................(((((((.((((((((((((................................)).)))))))))).))))))).... (-12.88 = -14.75 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:02 2011