| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,741,607 – 1,741,673 |
| Length | 66 |
| Max. P | 0.916162 |
| Location | 1,741,607 – 1,741,673 |
|---|---|
| Length | 66 |
| Sequences | 4 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 84.09 |
| Shannon entropy | 0.25542 |
| G+C content | 0.35367 |
| Mean single sequence MFE | -15.07 |
| Consensus MFE | -10.23 |
| Energy contribution | -10.73 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.916162 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1741607 66 + 3288761 GCAACAUUUAAAUUGCCAGACUUGAGAUUGUUACAUAAAUCUGAUCCGCAGCAAUUGUAAAUGUUA ..((((((((((((((......(.(((((........))))).)......)))))).)))))))). ( -15.40, z-score = -2.64, R) >droSim1.chr2L 295044 66 - 22036055 ACAACAUUUAAGUUGCCCGAUUUGCGAUUGUUACAUAAAUUCGAUCCGCAGCAAUGGUAAAUGUUA ..((((((((.(((((......((((((((...........)))).)))))))))..)))))))). ( -16.10, z-score = -2.23, R) >droSec1.super_192 7879 66 - 46235 ACAACAUUUAAGUUGCCAGAUUUGCGAUUGUUACAUAAAUUCGAUCCGCAGCAAUGGUAAAUGUUA ..((((((((.(((((......((((((((...........)))).)))))))))..)))))))). ( -16.10, z-score = -2.39, R) >droEre2.scaffold_4929 23717862 65 + 26641161 GAAACAUUUAAAUUGCCUGACUAUCGAUCGUUAAAUGAAACCGAUCCGC-GCAAAGUUAAAUGUUG ..(((((((((.((((.((......(((((...........))))))).-))))..))))))))). ( -12.70, z-score = -2.45, R) >consensus ACAACAUUUAAAUUGCCAGACUUGCGAUUGUUACAUAAAUCCGAUCCGCAGCAAUGGUAAAUGUUA ..((((((((.(((((......((((((((...........)))).)))))))))..)))))))). (-10.23 = -10.73 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:01 2011