| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,717,727 – 1,717,803 |
| Length | 76 |
| Max. P | 0.934411 |
| Location | 1,717,727 – 1,717,803 |
|---|---|
| Length | 76 |
| Sequences | 6 |
| Columns | 88 |
| Reading direction | forward |
| Mean pairwise identity | 64.49 |
| Shannon entropy | 0.65310 |
| G+C content | 0.40664 |
| Mean single sequence MFE | -22.85 |
| Consensus MFE | -5.70 |
| Energy contribution | -6.48 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.46 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.25 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.934411 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1717727 76 + 3288761 AUAGAUAUGCUAAGUGAGGAAAUUACUCUUCACCACCAUAUUGAGAGUUGCUGAGUAAGAGAGACACUCUGUAGCA------------ ...((((((....(((((((......)))))))...))))))....(((((.((((.........)))).))))).------------ ( -20.30, z-score = -1.97, R) >droEre2.scaffold_4784 23384014 72 + 25762168 ----AUAGGCUAAGUGAAGAAAUUACUCUUCACAAUC---UUAAGAGUUGCUGAGUAAGAGAGACACUCUCUAACAACC--------- ----...(((...(((((((......)))))))..((---....))...)))..((.((((((...)))))).))....--------- ( -18.60, z-score = -2.01, R) >droAna3.scaffold_13250 2021187 77 + 3535662 AUAUGUAUUGUAUGCAGUGAAAACACG---CAUAAAGCACUGAAAAUUAGCUGCGUAAAGAGAAUACUCU-UGACAAACGC------- ..........(((((.(((....))))---))))..(((((((...)))).)))((.(((((....))))-).))......------- ( -16.30, z-score = -1.30, R) >droYak2.chr2L_random 2305280 78 - 4064425 GCAGAUAGGCUGAGUGAAGAGAUU------CGCAAGC---UUAAGAGAAAGUGAGUUAGAGAGACACUCUCUAGCAACCAGGAUAUA- .....((((((..(((((....))------))).)))---)))...........(((((((((...)))))))))............- ( -22.70, z-score = -2.70, R) >droSec1.super_127 52906 85 + 72731 ACAGAUAGGCUGAGUGAAGAGAUUACUCUUCGCAAGC---UUAAGAGAAGGUGAGUUAGAGAGACACUCUCUAGCAACCAGGAGAUAA .....((((((..((((((((....)))))))).)))---)))......(((..(((((((((...))))))))).)))......... ( -33.00, z-score = -4.88, R) >droSim1.chrU 7754208 85 - 15797150 ACAGAUAGGCUGAGUGAAGAGAUUACUGUUCGCAAGC---UUAAGAGAAGGAGAGUUAGAGAGACACUCUCUAGCAACCAGGAGAUUA .....((((((..(((((.((....)).))))).)))---)))......((...(((((((((...)))))))))..))......... ( -26.20, z-score = -3.12, R) >consensus ACAGAUAGGCUAAGUGAAGAAAUUACUCUUCACAAGC___UUAAGAGAAGCUGAGUAAGAGAGACACUCUCUAGCAACCAG_______ .............(((((..........))))).....................((.((((((...)))))).))............. ( -5.70 = -6.48 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:00 2011