Locus 2895

Sequence ID dm3.chr2RHet
Location 1,703,836 – 1,703,951
Length 115
Max. P 0.918136
window3988

overview

Window 8

Location 1,703,836 – 1,703,951
Length 115
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 50.14
Shannon entropy 0.69972
G+C content 0.40997
Mean single sequence MFE -30.00
Consensus MFE -13.74
Energy contribution -10.87
Covariance contribution -2.87
Combinations/Pair 1.94
Mean z-score -1.16
Structure conservation index 0.46
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.26
SVM RNA-class probability 0.918136
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2RHet 1703836 115 - 3288761
GGCCUUGCUAUGGCUGCGAAGUCCUUUAUGAAGCAUCUGUUAUAGCUCGCGAGGCCUAGGAAUGAUCUAACCUCAAAUACUGUUUUUGGGUUGGGGAAAUUCCCUAAUGGCCCAG-----
.((...(((((((((((....((......)).)))...))))))))..))(.((((..(((((..(((((((.((((.......)))))))))))...))))).....)))))..----- ( -37.50, z-score =  -1.55, R)
>anoGam1.chr3R 27377959 119 - 53272125
GGUCUGGCAAUGAUACUAAAUUUCUCUACAAAUCUCCUGAAGUAGCCCGCCAGGCCUAGGAAUCGUUGGACCUC-CUUGCUAUCACAUGGUGUUGGAAAUUCCUUAACCGCUAGGCAUUU
.(((((((..(((((...................(((((.....(((.....))).)))))...((.((....)-)..)))))))...(((...((.....))...)))))))))).... ( -28.90, z-score =  -0.12, R)
>triCas2.chrUn_102 82391 114 + 88587
GGUUUUGUAAUUUUUGCGAAAUUUUUAAUGAAUUUUCGGUAGUAUCCAAUUAAACCAAGAAAACCUUUGAGUUGUUUCGGUGUUGUUGGAAUACUAUAG-UCUAAAAUAGCUUUA-----
.((((((.........(((((.(((....))).)))))((((((((((((...(((.(((.(((......))).))).)))...))))).)))))))..-..)))))).......----- ( -23.60, z-score =  -1.81, R)
>consensus
GGUCUUGCAAUGAUUGCGAAAUUCUUUAUGAAUCUUCUGUAGUAGCCCGCCAGGCCUAGGAAUCAUUUGACCUC_AUUGCUGUUAUUGGGUUACGGAAAUUCCAUAAUAGCUAAG_____
((((((((........................................))))))))...............................((((((.((......))...))))))....... (-13.74 = -10.87 +  -2.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:00 2011