| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,699,638 – 1,699,746 |
| Length | 108 |
| Max. P | 0.818517 |
| Location | 1,699,638 – 1,699,746 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 57.06 |
| Shannon entropy | 0.69887 |
| G+C content | 0.43021 |
| Mean single sequence MFE | -29.05 |
| Consensus MFE | -10.41 |
| Energy contribution | -11.60 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.818517 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1699638 108 - 3288761 -UGGAUUUUCGCUUUCGGACUCUGAAUCGGUGGAGUAUUGCUUAUUAUUCCUGUACUGUGAGAAUCCGGACCGCACGAGCGGUCCAAUCCGCUUAGUUAUGCAAAAGCU- -.((((((((((.(((((...))))).....((((((........))))))......))))))))))(((((((....))))))).....((((..........)))).- ( -38.10, z-score = -3.14, R) >droSim1.chrU 14450862 109 + 15797150 UUGAUUUUUCGUUAUCAGACUCUGAGUCUGUGGAGUACGGUUUACUAUUUCUGUAACGUGAGAAUGUGGGCUGCAUGAGCAGUCCAAUUCACUUGGAUAUGCAAAAGCU- (((....(((((((((((((.....))))).((((((.(.....))))))).)))))(((((....((((((((....)))))))).)))))..)))....))).....- ( -31.10, z-score = -1.54, R) >droSec1.super_94 29332 102 - 93855 -UUGAUGUUCGCUAUCGGAGUAU------GUGGAGUGUGGUUUAUUAUUCCUACACUCUGAGAAUCCGGGCUGCAUGAGCAGUCCAACUCGCUUAGGUAUGCAAAAGCU- -.........(((((((((....------.((((((((((..........))))))))))....)))(((((((....)))))))..........)))).)).......- ( -34.00, z-score = -2.22, R) >droAna3.scaffold_13280 1159737 104 + 1428709 -UAGGUAUUC--UAUUCUACUCAUGA--AGUGUAG-GCUUUCUGCUAUUUGCCUUUUCUUUCACUGUUAGUCCCAACCCUCCAACAGCUUAUACGAAUUCAUAUAUGGUU -..((.((((--..(((.......))--)((((((-((.....((.....))............((((.(..........).)))))))))))))))))).......... ( -13.00, z-score = 1.00, R) >consensus _UGGAUUUUCGCUAUCGGACUCUGAA___GUGGAGUACGGUUUACUAUUCCUGUACUCUGAGAAUCCGGGCCGCAUGAGCAGUCCAACUCACUUAGAUAUGCAAAAGCU_ .............................(((((((((((..........)))))))..........(((((((....)))))))...)))).................. (-10.41 = -11.60 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:59 2011