| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,694,566 – 1,694,626 |
| Length | 60 |
| Max. P | 0.549593 |
| Location | 1,694,566 – 1,694,626 |
|---|---|
| Length | 60 |
| Sequences | 3 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 56.77 |
| Shannon entropy | 0.60518 |
| G+C content | 0.40871 |
| Mean single sequence MFE | -11.40 |
| Consensus MFE | -6.13 |
| Energy contribution | -4.13 |
| Covariance contribution | -1.99 |
| Combinations/Pair | 1.71 |
| Mean z-score | -0.63 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.549593 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1694566 60 - 3288761 CAUUCUUGAAAACAAGAGACGAGAACGUGACACAUGUGUGUACUUG-UGCUAGAAGACGAU--- ..((((.(...(((((..(((....))).((((....)))).))))-).).))))......--- ( -12.00, z-score = -0.82, R) >droSec1.super_2123 1225 64 + 5287 CGGUGCUGAAAGCAGUGACCAAAAAAUCGCUGGAGACAAUCAUUUAUUGUUAGCCUUACAUUAC .(((........((((((........))))))..((((((.....)))))).)))......... ( -12.20, z-score = -0.72, R) >droSim1.chr2h_random 1693406 62 + 3178526 --GUGCUGAAAGCAGUGACCAAAAAAUCGCUGGAGACAAACAUUUAUUGUUAGCCUUACAUUCC --..(((.....((((((........))))))..(((((.......)))))))).......... ( -10.00, z-score = -0.35, R) >consensus C_GUGCUGAAAGCAGUGACCAAAAAAUCGCUGGAGACAAACAUUUAUUGUUAGCCUUACAUU_C ...(((((....))))).............((....)).......................... ( -6.13 = -4.13 + -1.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:58 2011