| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,693,198 – 1,693,252 |
| Length | 54 |
| Max. P | 0.511353 |
| Location | 1,693,198 – 1,693,252 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 52.00 |
| Shannon entropy | 0.67048 |
| G+C content | 0.37946 |
| Mean single sequence MFE | -12.44 |
| Consensus MFE | -2.69 |
| Energy contribution | -4.47 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.22 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.511353 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1693198 54 - 3288761 ---CAGUGCAC-CGUUAUAAU-AACAGCUGUUAAAGUCGGCUGUUGCGAG-CAUAUACCA ---..((((..-(((......-((((((((.......))))))))))).)-)))...... ( -14.50, z-score = -1.44, R) >droWil1.scaffold_181141 387365 60 - 5303230 CAGCUUUACGUCGGAAAGUCUAAAAAGCCAUGUAAGUAUACAGCUGUUAUAUGAAAAGCA (((((((((((.((.............))))))))......))))).............. ( -8.22, z-score = 0.26, R) >droMoj3.scaffold_6500 19403119 55 + 32352404 ---CAGUCCACUUGUAAGCAU-AAUAGCUGUUAAAAUCAGCUGUUAUCUU-CAAAUAUCA ---........(((.(((.((-((((((((.......)))))))))))))-)))...... ( -14.60, z-score = -5.13, R) >consensus ___CAGUACAC_CGUAAGAAU_AAAAGCUGUUAAAGUCAGCUGUUGUCAU_CAAAUACCA ......................((((((((.......))))))))............... ( -2.69 = -4.47 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:57 2011