| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,675,965 – 1,676,061 |
| Length | 96 |
| Max. P | 0.550417 |
| Location | 1,675,965 – 1,676,061 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 49.01 |
| Shannon entropy | 0.87774 |
| G+C content | 0.41592 |
| Mean single sequence MFE | -25.70 |
| Consensus MFE | -7.11 |
| Energy contribution | -7.80 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.550417 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1675965 96 + 3288761 ACCCAGGGCAGUAAGACCCUGGAUAAAUACUGUAUGGAGGUGAGCGACCAUUUCUCACGGAUUUUAAAUCGCCCGAAGUAUCCAACUCCCUU-AUUG--------------------- ..((((((........)))))).............(((((((((.........)))))((((......((....))...))))..))))...-....--------------------- ( -24.40, z-score = -1.14, R) >droEre2.scaffold_4845 564400 118 + 22589142 AGCCAAGGGAAUAAGACUUUGGAAGAAUAUUAUUUGGAGGUGAAUAAACACCUCUCUCUUAUCCUCAACGGAUUAAAAGCCAUGGGACACCCAAUGGAGGCAGUCAGAGCCCUGUCCG ..((((((........))))))..((..((.....(((((((......))))))).....))..))..(((((......(((((((...))).)))).(((.......)))..))))) ( -32.40, z-score = -0.70, R) >droAna3.scaffold_13099 1963037 118 + 3324263 ACCCAAGCAGGUAGAACUCUGGAAAAAUUCUAUAAUGAGGUCAAUAACCACUUUUCCUUGAUUUUAAAUAAAUUAAAACAAUCAGAGCAUGCGACUAACGUGACCAGCGCUCUAAUUG (((......)))........((((((..((......))(((.....)))..))))))(((((((.....)))))))..((((.(((((.((..((....))...))..))))).)))) ( -20.50, z-score = -0.87, R) >droMoj3.scaffold_6498 1846644 118 + 3408170 AUUCAAGGCAACAACGACUUGGAAACCUACUAUAAGCAAGUUAAUAGUCAGUUUUCUUUAAUUUUACAGGCCUUAAAGGCAAGCGAACAACGAGUCGUAGUAUUGUCCGCAUUAAUAG ......((((((.((((((((((((.(((((((.((....)).))))).)).)))).............(((.....)))..........)))))))).))..))))........... ( -25.50, z-score = -1.85, R) >consensus ACCCAAGGCAAUAAGACCCUGGAAAAAUACUAUAAGGAGGUGAAUAACCACUUCUCUCUGAUUUUAAAUGGAUUAAAAGAAACAGAACACCCAAUUGA_GUA_UCAGCGC_CUAAU_G ..((((((........)))))).............(((((((......)))))))............................................................... ( -7.11 = -7.80 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:56 2011