| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,662,520 – 1,662,670 |
| Length | 150 |
| Max. P | 0.661951 |
| Location | 1,662,520 – 1,662,670 |
|---|---|
| Length | 150 |
| Sequences | 4 |
| Columns | 151 |
| Reading direction | forward |
| Mean pairwise identity | 57.69 |
| Shannon entropy | 0.69741 |
| G+C content | 0.35655 |
| Mean single sequence MFE | -38.19 |
| Consensus MFE | -4.71 |
| Energy contribution | -3.65 |
| Covariance contribution | -1.06 |
| Combinations/Pair | 1.91 |
| Mean z-score | -2.86 |
| Structure conservation index | 0.12 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.661951 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1662520 150 + 3288761 -UGGGACAGUUAUCUUGUAAGAUGAUAUGUCCCUAGCGUAAGAGAAGUUAACUUUUUUCCACUUUUAUAUUCUCGGCUUUUGUUUUGUCUUGUAUAUAAGACAAUACAUCAGACGAUGUAUGAUCAGGGGAAAGCCGAGAAACGAAAAUUU -.(((((((((((((....))))))).))))))...(((.(((((((....)))))))...........((((((((((((.((((((((((....)))))))(((((((....)))))))....))).)))))))))))))))....... ( -52.10, z-score = -5.95, R) >droWil1.scaffold_181148 4406680 146 + 5435427 -AGGUAUUGUAAUUUUAAAAGAGGAGAUUUCGCGAGGCCUAGAAAACUUAAACUU----UUCAAUUAAAACUUUAGCAGGGCAUAUAUUACUAAUGUAAGCUGCCACAGAUGACUCAGAAGUAUCAGGAGCAAGCCUAGAUAUAAAUAAUU -((((.((((((((((.......))))))..)))).)))).(((((.......))----))).........((((.(.((((.....((((....))))(((.((...((((.((....)))))).)))))..)))).)...))))..... ( -24.00, z-score = 1.01, R) >droVir3.scaffold_13050 2071074 146 - 3426691 -UGAAACAUUUAUUUUGAAUGAUGAUAUUUCACGAGGGGUGGAGAAAUUAAAUUU----AGUUAUUGACACGCUAGCAGAAGAUUUGCUAGCAAUAUAGGCUGCCAAUGACUCAGAAGUGGUGUCCGACGAAAGUCGAGACACAAAAACUU -(((((...(((((......)))))..))))).(((.((..(...(((((....)----))))........(((((((((...)))))))))........)..)).....)))..((((.(((((((((....)))).)))))....)))) ( -42.30, z-score = -4.21, R) >droMoj3.scaffold_3773 9435 147 - 13794 CAGGAACAUUGAUUUUGAACGAAGCAAUUUCACGUGGUUUCGCGAAACUGAACUU----CGAUAUAAAAACAUUAGCCGUAAUCUUAUUUGAAAUAAAAGCCGAUACUGCCUCAAUGGUAGUGUCAGAUGAAAGCCUAGAUAAGAAAACUU ..((.....((.(((((..(((((((.((((.((......)).)))).))..)))----))...))))).))....))((..(((((((((.........(.(((((((((.....))))))))).).........)))))))))..)).. ( -34.37, z-score = -2.29, R) >consensus _AGGAACAGUUAUUUUGAAAGAUGAUAUUUCACGAGGGUUAGAGAAAUUAAACUU____CGCUAUUAAAACAUUAGCAGUAGAUUUAUUAGAAAUAUAAGCCGACACAGACGAAGAAGUAGUAUCAGAAGAAAGCCGAGAUACAAAAACUU .(((................(((.....))).......................................((((.............(((......)))(.(((((((((....))))))))).).))))....))).............. ( -4.71 = -3.65 + -1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:54 2011