| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,640,080 – 1,640,137 |
| Length | 57 |
| Max. P | 0.879690 |
| Location | 1,640,080 – 1,640,137 |
|---|---|
| Length | 57 |
| Sequences | 3 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 83.33 |
| Shannon entropy | 0.23272 |
| G+C content | 0.34184 |
| Mean single sequence MFE | -9.67 |
| Consensus MFE | -8.46 |
| Energy contribution | -8.13 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.879690 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1640080 57 - 3288761 UCAUAUACCUUAACGAUCUCCUUUAAAAUUUCGAAAGAAAUGCUUAAGUCACU-UUGU-------- ............((((.....(((((.(((((....)))))..))))).....-))))-------- ( -8.00, z-score = -2.18, R) >droSim1.chr2h_random 2050550 66 + 3178526 UCAUAUACCUUAACGAUCUCCUUUAAAAUUUUGAAAGAAAUGCCUGAGUCUGUGUCGUCACUUCGU ............((((....(((....(((((....)))))....)))...(((....))).)))) ( -7.70, z-score = -0.36, R) >droYak2.chr2L_random 886615 66 - 4064425 UCGUAUACCUUAACGAUCUCCUUUAAAAUUUCGAAAGAAAUGCUUGAGUCUGUGUCGUUACUUCGU ..........((((((((..(((....(((((....)))))....)))...).)))))))...... ( -13.30, z-score = -2.25, R) >consensus UCAUAUACCUUAACGAUCUCCUUUAAAAUUUCGAAAGAAAUGCUUGAGUCUGUGUCGU_ACUUCGU ............(((((...(((....(((((....)))))....))).....)))))........ ( -8.46 = -8.13 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:52 2011