| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,631,541 – 1,631,619 |
| Length | 78 |
| Max. P | 0.506054 |
| Location | 1,631,541 – 1,631,619 |
|---|---|
| Length | 78 |
| Sequences | 3 |
| Columns | 88 |
| Reading direction | reverse |
| Mean pairwise identity | 85.61 |
| Shannon entropy | 0.20298 |
| G+C content | 0.37587 |
| Mean single sequence MFE | -13.78 |
| Consensus MFE | -10.41 |
| Energy contribution | -9.97 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.506054 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1631541 78 - 3288761 GACAAACAAAAAGAAGCAUUUUUACCACA----------CCGGUUUUCAUCGGUAUCGCCAGCCAAGUUCUUCUGGUCAUACCUAUCU ............((((.......(((...----------..)))))))...(((((.(((((..........))))).)))))..... ( -13.31, z-score = -1.64, R) >droSim1.chr2h_random 1176642 88 - 3178526 GACACACAAAAAGAAGCAUUUUUACCACAAAAUGUAAAUGUGUUUUUCAUCGGUAUCACUAGCCAAGUUCUUCUGGUCAUACCUAUCU ...........((((((((.(((((........))))).))))))))....(((((.(((((..........))))).)))))..... ( -17.20, z-score = -2.46, R) >droSec1.super_168 25696 88 + 36937 GACACACAAAAAGAAUCAUUUUUCCCACAAAAUGUACAUAUGUUUUUCAUCGGUAUCACUAGCCAAGUUCUUCUGGUCAUACCUAUCU ((.(.(((........((((((......))))))......))).).))...(((((.(((((..........))))).)))))..... ( -10.84, z-score = -0.94, R) >consensus GACACACAAAAAGAAGCAUUUUUACCACAAAAUGUA_AUAUGUUUUUCAUCGGUAUCACUAGCCAAGUUCUUCUGGUCAUACCUAUCU ...................................................(((((.(((((..........))))).)))))..... (-10.41 = -9.97 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:51 2011