| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,416,414 – 1,416,477 |
| Length | 63 |
| Max. P | 0.784661 |
| Location | 1,416,414 – 1,416,477 |
|---|---|
| Length | 63 |
| Sequences | 3 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 69.44 |
| Shannon entropy | 0.40414 |
| G+C content | 0.54145 |
| Mean single sequence MFE | -19.97 |
| Consensus MFE | -14.98 |
| Energy contribution | -14.43 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.784661 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1416414 63 - 3288761 GCAGCAAUAGCAGCUUGGUGACUGAUAUUGGGCUGGUCAUACAGAUCGCCAAUAUCAUUGCCU ((.((....)).))..((..(.(((((((((.(.((((.....)))))))))))))))..)). ( -22.20, z-score = -2.09, R) >droSec1.super_201 30515 54 - 43716 GCAGCUAUAGCAGCUUGGCGGCUAGUGCUGGGCUGCUCGU---CACUUUCAAGUUCA------ ........(((((((..(((.....)))..)))))))...---..............------ ( -18.00, z-score = -0.33, R) >droEre2.scaffold_4929 5079169 54 + 26641161 GCAGCAAUAGCAGCUUGGCGGUUAGUGCCGGGCUGCUCGU---CACUUCCAAGGUCA------ ........((((((((((((.....))))))))))))...---..............------ ( -19.70, z-score = -1.19, R) >consensus GCAGCAAUAGCAGCUUGGCGGCUAGUGCUGGGCUGCUCGU___CACUUCCAAGAUCA______ ........((((((((((((.....)))))))))))).......................... (-14.98 = -14.43 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:47 2011