| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,396,503 – 1,396,561 |
| Length | 58 |
| Max. P | 0.985899 |
| Location | 1,396,503 – 1,396,561 |
|---|---|
| Length | 58 |
| Sequences | 4 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 96.55 |
| Shannon entropy | 0.05595 |
| G+C content | 0.43966 |
| Mean single sequence MFE | -16.73 |
| Consensus MFE | -13.61 |
| Energy contribution | -14.18 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.89 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.944862 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1396503 58 + 3288761 GGAAACAUUGUAGCUAAUAAGCGAAUGUCGCAACUGCAGACACAUCCGCUUAGAAGCU (....).....((((..((((((..((((((....)).))))....))))))..)))) ( -18.60, z-score = -3.37, R) >droSec1.super_62 3780 58 + 174595 GGAAACAUUGUAUCCAAUAAGCGAAUGUCUCAACUGCAGACACAUCCGCUUAGAAGCU (((.((...)).)))..((((((.((((.((.......)).)))).))))))...... ( -13.50, z-score = -2.22, R) >droYak2.chr2L_random 1323844 58 + 4064425 GGAAACAUUGUAGUUAAUAAGCGAAUGUCGCAACUGCAGACACAUCCGCUUAGAAGCU (....).....((((..((((((..((((((....)).))))....))))))..)))) ( -16.20, z-score = -2.62, R) >droEre2.scaffold_4845 48852 58 + 22589142 GGAAACAUUGUAGCUAAUAAGCGAAUGUCGCAACUGCAGACACAUCCGCUUAGAAGCU (....).....((((..((((((..((((((....)).))))....))))))..)))) ( -18.60, z-score = -3.37, R) >consensus GGAAACAUUGUAGCUAAUAAGCGAAUGUCGCAACUGCAGACACAUCCGCUUAGAAGCU (....).....((((..((((((..((((((....)).))))....))))))..)))) (-13.61 = -14.18 + 0.56)
| Location | 1,396,503 – 1,396,561 |
|---|---|
| Length | 58 |
| Sequences | 4 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 96.55 |
| Shannon entropy | 0.05595 |
| G+C content | 0.43966 |
| Mean single sequence MFE | -19.22 |
| Consensus MFE | -16.79 |
| Energy contribution | -17.35 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -3.10 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.22 |
| SVM RNA-class probability | 0.985899 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1396503 58 - 3288761 AGCUUCUAAGCGGAUGUGUCUGCAGUUGCGACAUUCGCUUAUUAGCUACAAUGUUUCC ((((..(((((((((((...(((....))))))))))))))..))))........... ( -21.30, z-score = -3.76, R) >droSec1.super_62 3780 58 - 174595 AGCUUCUAAGCGGAUGUGUCUGCAGUUGAGACAUUCGCUUAUUGGAUACAAUGUUUCC ..((..(((((((((((.((.......)).)))))))))))..))............. ( -19.00, z-score = -2.95, R) >droYak2.chr2L_random 1323844 58 - 4064425 AGCUUCUAAGCGGAUGUGUCUGCAGUUGCGACAUUCGCUUAUUAACUACAAUGUUUCC ......(((((((((((...(((....))))))))))))))................. ( -15.30, z-score = -1.95, R) >droEre2.scaffold_4845 48852 58 - 22589142 AGCUUCUAAGCGGAUGUGUCUGCAGUUGCGACAUUCGCUUAUUAGCUACAAUGUUUCC ((((..(((((((((((...(((....))))))))))))))..))))........... ( -21.30, z-score = -3.76, R) >consensus AGCUUCUAAGCGGAUGUGUCUGCAGUUGCGACAUUCGCUUAUUAGCUACAAUGUUUCC ((((..(((((((((((...(((....))))))))))))))..))))........... (-16.79 = -17.35 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:44 2011