| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,383,531 – 1,383,674 |
| Length | 143 |
| Max. P | 0.705462 |
| Location | 1,383,531 – 1,383,674 |
|---|---|
| Length | 143 |
| Sequences | 4 |
| Columns | 143 |
| Reading direction | reverse |
| Mean pairwise identity | 86.95 |
| Shannon entropy | 0.21216 |
| G+C content | 0.40363 |
| Mean single sequence MFE | -35.83 |
| Consensus MFE | -30.44 |
| Energy contribution | -31.00 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.705462 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1383531 143 - 3288761 UCUUAGCUAGCACAAUUUGUUUACGUUAUGAUUUUUCAGCCGGCCAACUGUCCAAUGCUUUGACAUAGUCAUAUUCUUGCUGAUGUAGCUUCUAAGCGGAUGUGUCUGCAGUUGCGACAUUCGCUUAUUAGCUACAAUGUUUC ((.((((.((((.....))))...)))).))....(((((.((...(((((.(((....)))..)))))......)).)))))(((((((..(((((((((((...(((....))))))))))))))..)))))))....... ( -39.10, z-score = -1.88, R) >droSec1.super_86 51266 139 + 128402 UCUUAGCUAGCACAAUUUGUUUACGAUAUAAUUUUGAAGCCGGCCAACUGUCCAAUUCUUUGACAUAGUCAUAUUCUUGCUGAUGUAGCUUC-AAGCGGAUGUGUCCGCAGUUGCGACAUUCGCUUAUUGGAUACAAUAA--- ................((((...(((((.....(((((((.((.(....).)).........((((((.((......)))).)))).)))))-))((((((((...(((....))))))))))).)))))...))))...--- ( -31.90, z-score = -0.34, R) >droYak2.chrU 6623617 123 + 28119190 --------------------UUACGUUAUAAUUUUGCAGCCGGCCAACUGUCCAAUGCUUUGACAUAGUCAUAUUCUUUCUGAUGUAGCUUCUAAGCGGAUGUGUCUGCAGUUGCGACAUUCGCUUAUUGGCUACAAUGUUUC --------------------...............(((...(((.....)))...)))...(((((.((((.........))))((((((..(((((((((((...(((....))))))))))))))..)))))).))))).. ( -33.30, z-score = -1.79, R) >droEre2.scaffold_4929 4168040 143 + 26641161 UCUAAGCUAGCAAAAUUUGUUUACGUUAUGAUUUUUCAGCCGGCCAACUGUCCAAUGCUUUGACAUAGUCAUAUUCUUGCUGAUGUAGCUUCUAAGCGGAUGUGUCUGCAGUUGCGACAUUCGCUUAUUAGCUACAAUGUUUC ...(((((((((((((.((.(((.(((((((....)))((.((.(....).))...))..)))).))).)).))).)))))).(((((((..(((((((((((...(((....))))))))))))))..)))))))..)))). ( -39.00, z-score = -1.87, R) >consensus UCUUAGCUAGCACAAUUUGUUUACGUUAUAAUUUUGCAGCCGGCCAACUGUCCAAUGCUUUGACAUAGUCAUAUUCUUGCUGAUGUAGCUUCUAAGCGGAUGUGUCUGCAGUUGCGACAUUCGCUUAUUAGCUACAAUGUUUC ....................................((((.((...(((((.(((....)))..)))))......)).)))).(((((((..(((((((((((...(((....))))))))))))))..)))))))....... (-30.44 = -31.00 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:42 2011