| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,084,746 – 2,084,855 |
| Length | 109 |
| Max. P | 0.809073 |
| Location | 2,084,746 – 2,084,855 |
|---|---|
| Length | 109 |
| Sequences | 8 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 80.11 |
| Shannon entropy | 0.37427 |
| G+C content | 0.50288 |
| Mean single sequence MFE | -34.29 |
| Consensus MFE | -20.42 |
| Energy contribution | -21.24 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.809073 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2084746 109 + 23011544 CCAGAAAGUUGCAUAAAACUUUGCCGCCUCGAUUGAUUGAUGUGGCCUGGCAUUUGCCAGGUAAUCAGAGGCCAAGGAACCAACCUGUAAGCCAGAGU-------CCUUUGCAAAG- ........(((((....((((((.((((((.......((((...(((((((....))))))).)))))))))..(((......)))....).))))))-------....)))))..- ( -36.61, z-score = -2.93, R) >droSim1.chr2L 2055736 116 + 22036055 CCAGAAAGUUGCAUAAAACUUUGCCGCCUCGAUUGAUUGAUGUGGCCUGGCAUUUGCCAGGUAAUCAGAGGCCAAGGAAACAACCUGGAAGCCAAGGAGCCAGAGUCCUGGCGAAG- ((((((((((......))))))...(((((.......((((...(((((((....))))))).)))))))))...(....)...))))..((((.(((.......)))))))....- ( -43.11, z-score = -2.99, R) >droSec1.super_14 2031141 116 + 2068291 CCAGAAAGUUGCAUAAAACUUUGCCGCCACGAUUGAUUGAUGUGGCCUGGCAUUUGCCAGGUAAUCAGAGGCCAAGGAAACAACCUGGAAGCCAAGGAGCUAGAGUCCUAGCGAAG- ((((((((((......))))))((((((((.(((....))))))))(((((....))))).........)))...(....)...))))..........(((((....)))))....- ( -38.40, z-score = -2.52, R) >droYak2.chr2L 2071943 96 + 22324452 CCAGAAAGUUGCAUAAAACUUUGCCGCCUCGAUUGAUUGAUGUGGCCUGGCAUUUGCCAGGUAAUCAGAGGCCAAGGAAACGACCUGGAAGCCAGG--------------------- ((..((((((......))))))...(((((.......((((...(((((((....))))))).)))))))))...))......(((((...)))))--------------------- ( -34.71, z-score = -2.76, R) >droEre2.scaffold_4929 2135718 96 + 26641161 CCAGAAAGUUGCAUAAAACUUUGCCGCCUCGAUUGAUUGAUGUGGCCAGGCAUUUGCCAGGUAAUCAGAGGCCAAGGAAGCGACCUGGAAGCAAAG--------------------- ((((...(((((......(((((..(((((.......((((...(((.(((....))).))).))))))))))))))..)))))))))........--------------------- ( -29.71, z-score = -1.51, R) >droAna3.scaffold_12916 9802034 96 - 16180835 CCAGAAAGUUGCAUAAAAGUUUGCCGCCUCGAUUGAUUGAUGUGGCCAGGCAUUUGCCAGGUAAUCAAUGGCCAAGGAUGC-CCGUCGAUGCCAAAG-------------------- ..........((((........(((((.((((....)))).)))))..(((((((((((.........))))...))))))-).....)))).....-------------------- ( -26.00, z-score = -0.30, R) >dp4.chr4_group3 8893790 109 + 11692001 CCAGAAAGUUGCAUAAAACUUUGCCGCCUCGAUUGAUUGAUGUGGCCAGGCACUUUCCAGGUAAUCAAUGGCCAGGGAUAUGCCCUCGACUCCUGGA--------CCAAGGCUAAAG ((((((((((......))))))(((((.((((....)))).)))))..((((..((((.(((........))).))))..))))........)))).--------............ ( -32.90, z-score = -1.03, R) >droPer1.super_8 76094 109 + 3966273 CCAGAAAGUUGCAUAAAACUUUGCCGCCUCGAUUGAUUGAUGUGGCCAGGCACUUUCCAGGUAAUCAAUGGCCAGGGAUAUGCCCUCGACUCCUGGA--------CCAAGGCUAAAG ((((((((((......))))))(((((.((((....)))).)))))..((((..((((.(((........))).))))..))))........)))).--------............ ( -32.90, z-score = -1.03, R) >consensus CCAGAAAGUUGCAUAAAACUUUGCCGCCUCGAUUGAUUGAUGUGGCCAGGCAUUUGCCAGGUAAUCAGAGGCCAAGGAAACGACCUGGAAGCCAAGG_________C___GC_AA__ ((..((((((......))))))(((((.((((....)))).)))))..(((....))).))........(((..(((......)))....)))........................ (-20.42 = -21.24 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:08 2011